RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	CGI121	Q03705	181 aa	Known RBP	5.31	□□□□□ -1.56
RPT3	YDR394W	CTS2	Q06350	511 aa		5.31	□□□□□ -1.56
RPT3	YDR394W	YOR376W	Q08900	122 aa		5.31	□□□□□ -1.56
RPT3	YDR394W	YHR214C-E	Q8TGK0	99 aa		5.31	□□□□□ -1.56
RPT3	YDR394W	YHR213W-A	Q8TGT4	77 aa		5.31	□□□□□ -1.56
RPT3	YDR394W	ISN1	Q99312	450 aa		5.31	□□□□□ -1.56
RPT3	YDR394W	REP2	P03872	296 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	PDX1	P16451	410 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	FUS3	P16892	353 aa	Known RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	VMA5	P31412	392 aa	Known RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	AFG1	P32317	509 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	MRP20	P32387	263 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	EMP24	P32803	203 aa	Known RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	YBR096W	P38256	230 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	GCV3	P39726	170 aa	Predicted RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	YER158C	P40095	573 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	SRB7	P47822	140 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	OKP1	P53298	406 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	BSC5	P53755	489 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	PDR16	P53860	351 aa	Known RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	RNH201	P53942	307 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	DIG2	Q03373	323 aa	Known RBP	5.3	□□□□□ -1.56
RPT3	YDR394W	YML018C	Q03730	393 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	YPL272C	Q08984	517 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	AKR2	Q12013	749 aa		5.3	□□□□□ -1.56
RPT3	YDR394W	YPT1	P01123	206 aa	Known RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	CDC36	P06100	191 aa	Predicted RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	SGA1	P08019	549 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	DAL82	P21705	255 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	SEC22	P22214	214 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	ERG3	P32353	365 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	ECM25	P32525	599 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	AFR1	P33304	620 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	COS9	P36034	407 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	CBT1	P36038	271 aa	Predicted RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	LSM12	P38828	187 aa	Known RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	ASP1	P38986	381 aa	Predicted RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	SHO1	P40073	367 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	RPL13B	P40212	199 aa	Known RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	REE1	P40893	198 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	NIT2	P47016	307 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	MSY1	P48527	492 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	OCA1	P50946	238 aa	Predicted RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	CWC25	P53854	179 aa	Known RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	ACT1	P60010	375 aa	Known RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	RSM23	Q01163	450 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	YDR102C	Q03864	110 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	SCP1	Q08873	200 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	TFC7	Q12415	435 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	ISA2	Q12425	185 aa		5.29	□□□□□ -1.56
RPT3	YDR394W	RPL13A	Q12690	199 aa	Predicted RBP	5.29	□□□□□ -1.56
RPT3	YDR394W	FMP27	Q06179	2628 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	RPP2A	P05319	106 aa	Known RBP	5.28	□□□□□ -1.56
RPT3	YDR394W	SSA3	P09435	649 aa	Known RBP	5.28	□□□□□ -1.56
RPT3	YDR394W	ERG8	P24521	451 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	POP8	P38208	133 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	LAG1	P38703	411 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	SSO2	P39926	295 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	URM1	P40554	99 aa	Predicted RBP	5.28	□□□□□ -1.56
RPT3	YDR394W	CTK2	P46962	323 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	PCP1	P53259	346 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	INN1	P53901	409 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	HHT1	P61830	136 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	ATG21	Q02887	496 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	YDR248C	Q03786	193 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	CAB5	Q03941	241 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	MRX9	Q07349	420 aa	Known RBP	5.28	□□□□□ -1.56
RPT3	YDR394W	GRC3	Q07845	632 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	VAM3	Q12241	283 aa		5.28	□□□□□ -1.56
RPT3	YDR394W	TPI1	P00942	248 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	MES1	P00958	751 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	QCR2	P07257	368 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	RFA1	P22336	621 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	CNB1	P25296	175 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	LDS1	P31379	325 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	SRB6	P32570	121 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	MTC7	P32633	139 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	YBL010C	P32788	280 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	5.27	□□□□□ -1.57	not detected
RPT3	YDR394W	MOB2	P43563	287 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	GNA1	P43577	159 aa	Predicted RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	DUG1	P43616	481 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	PMT3	P47190	753 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	AVT4	P50944	713 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	YGL159W	P53110	370 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	PNC1	P53184	216 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	ALG9	P53868	555 aa	Known RBP	5.27	□□□□□ -1.57
RPT3	YDR394W	SDC1	Q03323	175 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	GIS1	Q03833	894 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	YDR387C	Q04162	555 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	CAC2	Q04199	468 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	RTT103	Q05543	409 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	MDM30	Q05930	598 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	EAF3	Q12432	401 aa		5.27	□□□□□ -1.57
RPT3	YDR394W	POL2	P21951	2222 aa	Known RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	GAL1	P04385	528 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	RPL30	P14120	105 aa	Known RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	RPD3	P32561	433 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	VMA8	P32610	256 aa	Known RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	VAM7	P32912	316 aa		5.26	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 68.4 ms