RNA–Protein interactions for RNA: YDR022C

ATG31, Transcript of Autophagy-specific protein required for autophagosome formation, yeast

Gene ATG31, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG31	YDR022C	YDR209C	Q03480	137 aa		0.55	□□□□□ -2.32
ATG31	YDR022C	NEJ1	Q06148	342 aa		0.55	□□□□□ -2.32
ATG31	YDR022C	ATG39	Q06159	398 aa		0.55	□□□□□ -2.32
ATG31	YDR022C	YPL257W	Q08974	193 aa		0.55	□□□□□ -2.32
ATG31	YDR022C	USB1	Q12208	290 aa	Known RBP	0.55	□□□□□ -2.32
ATG31	YDR022C	SNF8	Q12483	233 aa		0.55	□□□□□ -2.32
ATG31	YDR022C	IPP1	P00817	287 aa	Known RBP	0.54	□□□□□ -2.32
ATG31	YDR022C	DBP3	P20447	523 aa	Known RBP	0.54	□□□□□ -2.32
ATG31	YDR022C	DAL80	P26343	269 aa		0.54	□□□□□ -2.32
ATG31	YDR022C	MRX3	P38172	270 aa		0.54	□□□□□ -2.32
ATG31	YDR022C	EMC2	P47133	292 aa	Known RBP	0.54	□□□□□ -2.32
ATG31	YDR022C	ALG11	P53954	548 aa	Known RBP	0.54	□□□□□ -2.32
ATG31	YDR022C	SML1	Q04964	104 aa		0.54	□□□□□ -2.32
ATG31	YDR022C	YLR162W	Q06235	118 aa		0.54	□□□□□ -2.32
ATG31	YDR022C	SIR4	P11978	1358 aa		0.54	□□□□□ -2.32
ATG31	YDR022C	PRS2	P38620	318 aa	Known RBP	0.53	□□□□□ -2.32
ATG31	YDR022C	YHR180W	P38868	163 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	YAR068W	P39564	161 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	RPL13B	P40212	199 aa	Known RBP	0.53	□□□□□ -2.32
ATG31	YDR022C	YJR079W	P47126	109 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	SNZ2	P53824	298 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	SPG4	Q04438	115 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	YPR098C	Q06089	161 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	HEM25	Q07534	307 aa		0.53	□□□□□ -2.32
ATG31	YDR022C	RRS1	Q08746	203 aa	Known RBP	0.53	□□□□□ -2.32
ATG31	YDR022C	RPL13A	Q12690	199 aa	Predicted RBP	0.53	□□□□□ -2.32
ATG31	YDR022C	RPL24A	P04449	155 aa	Known RBP	0.52	□□□□□ -2.33
ATG31	YDR022C	PET9	P18239	318 aa	Known RBP	0.52	□□□□□ -2.33
ATG31	YDR022C	DAL82	P21705	255 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	YPT52	P36018	234 aa	Known RBP	0.52	□□□□□ -2.33
ATG31	YDR022C	RHO3	Q00245	231 aa	Known RBP	0.52	□□□□□ -2.33
ATG31	YDR022C	ADH6	Q04894	360 aa	Known RBP	0.52	□□□□□ -2.33
ATG31	YDR022C	ARR2	Q06597	130 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	YPR172W	Q06608	200 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	COQ10	Q08058	207 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	YOR186W	Q08560	144 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	HTL1	Q9URQ5	78 aa		0.52	□□□□□ -2.33
ATG31	YDR022C	QCR8	P08525	94 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	GPA2	P10823	449 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	SNA3	P14359	133 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	MRPL37	P36532	105 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	GOS1	P38736	223 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	SMB1	P40018	196 aa	Known RBP	0.51	□□□□□ -2.33
ATG31	YDR022C	THO1	P40040	218 aa	Known RBP	0.51	□□□□□ -2.33
ATG31	YDR022C	RPL33B	P41056	107 aa	Known RBP	0.51	□□□□□ -2.33
ATG31	YDR022C	TOS8	P53147	276 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	COX20	Q04935	205 aa		0.51	□□□□□ -2.33
ATG31	YDR022C	RIO1	Q12196	484 aa	Known RBP	0.51	□□□□□ -2.33
ATG31	YDR022C	COX2	P00410	251 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	FCY2	P17064	533 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	GRX2	P17695	143 aa	Known RBP	0.5	□□□□□ -2.33
ATG31	YDR022C	EHD3	P28817	500 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	HOM6	P31116	359 aa	Known RBP	0.5	□□□□□ -2.33
ATG31	YDR022C	SVP26	P38869	228 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	USE1	P53146	245 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	SNU23	Q12368	194 aa	Predicted RBP	0.5	□□□□□ -2.33
ATG31	YDR022C	YOR020W-A	Q3E824	90 aa		0.5	□□□□□ -2.33
ATG31	YDR022C	UPS2	P35200	230 aa		0.49	□□□□□ -2.33
ATG31	YDR022C	EBP2	P36049	427 aa	Known RBP	0.49	□□□□□ -2.33
ATG31	YDR022C	YBR096W	P38256	230 aa		0.49	□□□□□ -2.33
ATG31	YDR022C	YHR127W	P38833	243 aa	Known RBP	0.49	□□□□□ -2.33
ATG31	YDR022C	TIR3	P40552	269 aa		0.49	□□□□□ -2.33
ATG31	YDR022C	RPL37A	P49166	88 aa	Known RBP	0.49	□□□□□ -2.33
ATG31	YDR022C	YNL046W	P53956	172 aa		0.49	□□□□□ -2.33
ATG31	YDR022C	SSQ1	Q05931	657 aa	Predicted RBP	0.49	□□□□□ -2.33
ATG31	YDR022C	NIP7	Q08962	181 aa	Known RBP	0.49	□□□□□ -2.33
ATG31	YDR022C	YCT1	Q12235	531 aa		0.49	□□□□□ -2.33
ATG31	YDR022C	RNA15	P25299	296 aa	Predicted RBP	0.48	□□□□□ -2.33
ATG31	YDR022C	TCD1	P38756	429 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	RPF1	P38805	295 aa	Known RBP	0.48	□□□□□ -2.33
ATG31	YDR022C	CAT5	P41735	233 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	YJR056C	P47115	236 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	HAM1	P47119	197 aa	Known RBP	0.48	□□□□□ -2.33
ATG31	YDR022C	ILM1	P47155	203 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	ERV25	P54837	211 aa	Known RBP	0.48	□□□□□ -2.33
ATG31	YDR022C	YPL162C	Q12042	273 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	BTS1	Q12051	335 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	TPO4	Q12256	659 aa		0.48	□□□□□ -2.33
ATG31	YDR022C	MET5	P47169	1442 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	CDC8	P00572	216 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	POL30	P15873	258 aa	Known RBP	0.47	□□□□□ -2.33
ATG31	YDR022C	FZF1	P32805	299 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	YBR063C	P38083	404 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	ECM33	P38248	429 aa	Known RBP	0.47	□□□□□ -2.33
ATG31	YDR022C	BIG1	P38813	335 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.47	□□□□□ -2.33	not detected
ATG31	YDR022C	YNL217W	P40152	326 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	YMR144W	P40214	342 aa	Known RBP	0.47	□□□□□ -2.33
ATG31	YDR022C	MEP1	P40260	492 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	PGD1	P40356	397 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	GLG2	P47011	380 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	YML096W	Q04489	525 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	MSA1	Q08471	629 aa		0.47	□□□□□ -2.33
ATG31	YDR022C	VAR1	P02381	398 aa		0.46	□□□□□ -2.34
ATG31	YDR022C	CPA1	P07258	411 aa	Known RBP	0.46	□□□□□ -2.34
ATG31	YDR022C	PET100	P38958	111 aa		0.46	□□□□□ -2.34
ATG31	YDR022C	RPA43	P46669	326 aa		0.46	□□□□□ -2.34
ATG31	YDR022C	YAR1	P46683	200 aa		0.46	□□□□□ -2.34
ATG31	YDR022C	GPI8	P49018	411 aa		0.46	□□□□□ -2.34
ATG31	YDR022C	BOL2	P53082	120 aa		0.46	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 100.6 ms