RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W VMA5P31412 392 aaKnown RBP9.84□□□□□ -0.83
SIM1YIL123W FMT1P32785 401 aa9.84□□□□□ -0.83
SIM1YIL123W GEP4P38812 185 aa9.84□□□□□ -0.83
SIM1YIL123W AIM46P38885 310 aa9.84□□□□□ -0.83
SIM1YIL123W SWM2P40342 146 aa9.84□□□□□ -0.83
SIM1YIL123W IKS1P47042 667 aa9.84□□□□□ -0.83
SIM1YIL123W ADO1P47143 340 aaKnown RBP9.84□□□□□ -0.83
SIM1YIL123W BLM10P43583 2143 aa9.84□□□□□ -0.83
SIM1YIL123W SED4P25365 1065 aa9.83□□□□□ -0.84
SIM1YIL123W RFA3P26755 122 aaKnown RBP9.83□□□□□ -0.84
SIM1YIL123W YGL159WP53110 370 aa9.83□□□□□ -0.84
SIM1YIL123W SYM1Q06563 197 aa9.83□□□□□ -0.84
SIM1YIL123W PRM4Q12498 284 aa9.83□□□□□ -0.84
SIM1YIL123W PET20Q99373 253 aa9.83□□□□□ -0.84
SIM1YIL123W CBP6P07253 162 aaPredicted RBP9.82□□□□□ -0.84
SIM1YIL123W RPS16AP0CX51 143 aaKnown RBP9.82□□□□□ -0.84
SIM1YIL123W RPS16BP0CX52 143 aaKnown RBP9.82□□□□□ -0.84
SIM1YIL123W SEC62P21825 274 aa9.82□□□□□ -0.84
SIM1YIL123W PAN3P36102 679 aaPredicted RBP9.82□□□□□ -0.84
SIM1YIL123W MGE1P38523 228 aa9.82□□□□□ -0.84
SIM1YIL123W YIL169CP40442 995 aa9.82□□□□□ -0.84
SIM1YIL123W QDR1P40475 563 aa9.82□□□□□ -0.84
SIM1YIL123W ACS2P52910 683 aaKnown RBP9.82□□□□□ -0.84
SIM1YIL123W SOK2P53438 785 aaPredicted RBP9.82□□□□□ -0.84
SIM1YIL123W ATG31Q12421 196 aa9.82□□□□□ -0.84
SIM1YIL123W Q0144Q9ZZW2 109 aa9.82□□□□□ -0.84
SIM1YIL123W AAC1P04710 309 aa9.82□□□□□ -0.84
SIM1YIL123W YCR061WP25639 631 aa9.82□□□□□ -0.84
SIM1YIL123W MRT4P33201 236 aaKnown RBP9.82□□□□□ -0.84
SIM1YIL123W ARO9P38840 513 aaPredicted RBP9.82□□□□□ -0.84
SIM1YIL123W AVT4P50944 713 aa9.82□□□□□ -0.84
SIM1YIL123W MRPL19P53875 158 aa9.82□□□□□ -0.84
SIM1YIL123W COQ11Q05892 277 aa9.82□□□□□ -0.84
SIM1YIL123W YGL194C-AQ2V2P6 80 aa9.82□□□□□ -0.84
SIM1YIL123W TDH3P00359 332 aaKnown RBP RIP-Chip data9.81□□□□□ -0.84not detected
SIM1YIL123W TRR1P29509 319 aaKnown RBP9.81□□□□□ -0.84
SIM1YIL123W YPC1P38298 316 aa9.81□□□□□ -0.84
SIM1YIL123W PTI1P39927 425 aaPredicted RBP9.81□□□□□ -0.84
SIM1YIL123W YJL016WP47072 561 aa9.81□□□□□ -0.84
SIM1YIL123W NSA1P53136 463 aaPredicted RBP9.81□□□□□ -0.84
SIM1YIL123W OKP1P53298 406 aa9.81□□□□□ -0.84
SIM1YIL123W YNR048WP53740 393 aa9.81□□□□□ -0.84
SIM1YIL123W YML018CQ03730 393 aa9.81□□□□□ -0.84
SIM1YIL123W MRX9Q07349 420 aaKnown RBP9.81□□□□□ -0.84
SIM1YIL123W RPL30P14120 105 aaKnown RBP9.8□□□□□ -0.84
SIM1YIL123W RFA1P22336 621 aaKnown RBP9.8□□□□□ -0.84
SIM1YIL123W IFM1P25038 676 aa9.8□□□□□ -0.84
SIM1YIL123W SUA5P32579 426 aa9.8□□□□□ -0.84
SIM1YIL123W YBL010CP32788 280 aa9.8□□□□□ -0.84
SIM1YIL123W VAM7P32912 316 aa9.8□□□□□ -0.84
SIM1YIL123W SKP1P52286 194 aa9.8□□□□□ -0.84
SIM1YIL123W SCY1P53009 804 aa9.8□□□□□ -0.84
SIM1YIL123W TNA1P53322 534 aa9.8□□□□□ -0.84
SIM1YIL123W MRP51Q02950 344 aa9.8□□□□□ -0.84
SIM1YIL123W HRI1Q05905 244 aaKnown RBP9.8□□□□□ -0.84
SIM1YIL123W ERP4Q12450 207 aa9.8□□□□□ -0.84
SIM1YIL123W MCM1P11746 286 aa9.79□□□□□ -0.84
SIM1YIL123W SEN2P16658 377 aa9.79□□□□□ -0.84
SIM1YIL123W MAG1P22134 296 aaKnown RBP9.79□□□□□ -0.84
SIM1YIL123W MRPL36P36531 177 aa9.79□□□□□ -0.84
SIM1YIL123W MRPL39P36533 70 aa9.79□□□□□ -0.84
SIM1YIL123W SEC24P40482 926 aaKnown RBP9.79□□□□□ -0.84
SIM1YIL123W MOB2P43563 287 aa9.79□□□□□ -0.84
SIM1YIL123W NIF3P53081 288 aa9.79□□□□□ -0.84
SIM1YIL123W JAC1P53193 184 aa9.79□□□□□ -0.84
SIM1YIL123W FEX1Q08913 375 aa9.79□□□□□ -0.84
SIM1YIL123W USB1Q12208 290 aaKnown RBP9.79□□□□□ -0.84
SIM1YIL123W YDL180WQ12301 547 aa9.79□□□□□ -0.84
SIM1YIL123W IZH2Q12442 317 aa9.79□□□□□ -0.84
SIM1YIL123W TFB5Q3E7C1 72 aaPredicted RBP9.79□□□□□ -0.84
SIM1YIL123W SEC16P48415 2195 aaKnown RBP9.79□□□□□ -0.84
SIM1YIL123W RPB10P22139 70 aa9.78□□□□□ -0.84
SIM1YIL123W DBP2P24783 546 aaKnown RBP9.78□□□□□ -0.84
SIM1YIL123W BFR1P38934 470 aaKnown RBP RIP-Chip data9.78□□□□□ -0.84not detected
SIM1YIL123W ATF1P40353 525 aa9.78□□□□□ -0.84
SIM1YIL123W GNA1P43577 159 aaPredicted RBP9.78□□□□□ -0.84
SIM1YIL123W DID2P69771 204 aa9.78□□□□□ -0.84
SIM1YIL123W DLT1Q04216 342 aa9.78□□□□□ -0.84
SIM1YIL123W SPR28Q04921 423 aa9.78□□□□□ -0.84
SIM1YIL123W THI72Q08579 599 aa9.78□□□□□ -0.84
SIM1YIL123W IRA2P19158 3079 aa9.78□□□□□ -0.84
SIM1YIL123W CDC28P00546 298 aaKnown RBP9.77□□□□□ -0.85
SIM1YIL123W RPS31P05759 152 aaKnown RBP9.77□□□□□ -0.85
SIM1YIL123W RPL40AP0CH08 128 aaKnown RBP9.77□□□□□ -0.85
SIM1YIL123W RPL40BP0CH09 128 aaKnown RBP9.77□□□□□ -0.85
SIM1YIL123W ERG3P32353 365 aa9.77□□□□□ -0.85
SIM1YIL123W POP8P38208 133 aa9.77□□□□□ -0.85
SIM1YIL123W YER158CP40095 573 aa9.77□□□□□ -0.85
SIM1YIL123W YMR144WP40214 342 aaKnown RBP9.77□□□□□ -0.85
SIM1YIL123W YDR248CQ03786 193 aa9.77□□□□□ -0.85
SIM1YIL123W YAP6Q03935 383 aa9.77□□□□□ -0.85
SIM1YIL123W ERF2Q06551 359 aa9.77□□□□□ -0.85
SIM1YIL123W SCP1Q08873 200 aa9.77□□□□□ -0.85
SIM1YIL123W AEP3Q12089 606 aa9.77□□□□□ -0.85
SIM1YIL123W AGA2P32781 87 aa9.76□□□□□ -0.85
SIM1YIL123W KAE1P36132 386 aa9.76□□□□□ -0.85
SIM1YIL123W YND1P40009 630 aa9.76□□□□□ -0.85
SIM1YIL123W GWT1P47026 490 aa9.76□□□□□ -0.85
SIM1YIL123W MRP20P32387 263 aa9.75□□□□□ -0.85
SIM1YIL123W MOH1P38191 138 aa9.75□□□□□ -0.85
Retrieved 100 of 5,963 RNA–protein pairs in 54.9 ms