RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C AGC1Q12482 902 aa1.02□□□□□ -2.25
RTR1YER139C YPL119C-AQ3E751 87 aa1.02□□□□□ -2.25
RTR1YER139C YOS9Q99220 542 aa1.02□□□□□ -2.25
RTR1YER139C AI5_BETAQ9ZZX0 354 aa1.02□□□□□ -2.25
RTR1YER139C DPM1P14020 267 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C STE18P18852 110 aa1.01□□□□□ -2.25
RTR1YER139C COQ1P18900 473 aa1.01□□□□□ -2.25
RTR1YER139C MRPL25P23369 157 aa1.01□□□□□ -2.25
RTR1YER139C DPB2P24482 689 aaPredicted RBP1.01□□□□□ -2.25
RTR1YER139C SFC1P33303 322 aa1.01□□□□□ -2.25
RTR1YER139C SGE1P33335 543 aa1.01□□□□□ -2.25
RTR1YER139C HEK2P38199 381 aaKnown RBP RIP-Chip data1.01□□□□□ -2.25not detected
RTR1YER139C LDB7P38210 180 aa1.01□□□□□ -2.25
RTR1YER139C SSH1P38353 490 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C PRS2P38620 318 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C SIP3P38717 1229 aa1.01□□□□□ -2.25
RTR1YER139C NPT1P39683 429 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C COG3P40094 801 aa1.01□□□□□ -2.25
RTR1YER139C MSS2P40990 351 aa1.01□□□□□ -2.25
RTR1YER139C USE1P53146 245 aa1.01□□□□□ -2.25
RTR1YER139C SLM2P53955 656 aa1.01□□□□□ -2.25
RTR1YER139C RHO3Q00245 231 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C CDC14Q00684 551 aa1.01□□□□□ -2.25
RTR1YER139C YMR226CQ05016 267 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C YPR098CQ06089 161 aa1.01□□□□□ -2.25
RTR1YER139C HEM25Q07534 307 aa1.01□□□□□ -2.25
RTR1YER139C SLD7Q08457 257 aa1.01□□□□□ -2.25
RTR1YER139C VPS68Q12016 184 aa1.01□□□□□ -2.25
RTR1YER139C YRA1Q12159 226 aaKnown RBP1.01□□□□□ -2.25
RTR1YER139C MSH5Q12175 901 aa1.01□□□□□ -2.25
RTR1YER139C PST1Q12355 444 aa1.01□□□□□ -2.25
RTR1YER139C STH1P32597 1359 aa1□□□□□ -2.25
RTR1YER139C THP2O13539 261 aaKnown RBP1□□□□□ -2.25
RTR1YER139C RPL28P02406 149 aaKnown RBP1□□□□□ -2.25
RTR1YER139C RPP0P05317 312 aaKnown RBP1□□□□□ -2.25
RTR1YER139C CDC36P06100 191 aaPredicted RBP1□□□□□ -2.25
RTR1YER139C MATALPHA1P0CY06 175 aa1□□□□□ -2.25
RTR1YER139C HMLALPHA1P0CY07 175 aa1□□□□□ -2.25
RTR1YER139C POX1P13711 748 aa1□□□□□ -2.25
RTR1YER139C IDH1P28834 360 aaKnown RBP RIP-Chip data1□□□□□ -2.25not detected
RTR1YER139C QRI5P32344 111 aa1□□□□□ -2.25
RTR1YER139C VMA6P32366 345 aaKnown RBP1□□□□□ -2.25
RTR1YER139C RNP1P32385 249 aa1□□□□□ -2.25
RTR1YER139C RPT5P33297 434 aaKnown RBP1□□□□□ -2.25
RTR1YER139C JEN1P36035 616 aa1□□□□□ -2.25
RTR1YER139C MIC12P38341 106 aa1□□□□□ -2.25
RTR1YER139C YHL049CP38722 271 aa1□□□□□ -2.25
RTR1YER139C YHL026CP38740 315 aa1□□□□□ -2.25
RTR1YER139C TIF34P40217 347 aaKnown RBP1□□□□□ -2.25
RTR1YER139C MRPL49P40858 161 aaPredicted RBP1□□□□□ -2.25
RTR1YER139C YAR1P46683 200 aa1□□□□□ -2.25
RTR1YER139C YJL028WP47062 111 aa1□□□□□ -2.25
RTR1YER139C YJL016WP47072 561 aa1□□□□□ -2.25
RTR1YER139C MAL13P53338 473 aa1□□□□□ -2.25
RTR1YER139C MNT4P53745 580 aa1□□□□□ -2.25
RTR1YER139C TLG1Q03322 224 aa1□□□□□ -2.25
RTR1YER139C CGI121Q03705 181 aaKnown RBP1□□□□□ -2.25
RTR1YER139C YMR114CQ04471 368 aaKnown RBP1□□□□□ -2.25
RTR1YER139C ATG38Q05789 226 aaKnown RBP1□□□□□ -2.25
RTR1YER139C YLR283WQ05867 314 aa1□□□□□ -2.25
RTR1YER139C SSQ1Q05931 657 aaPredicted RBP1□□□□□ -2.25
RTR1YER139C ATG17Q06410 417 aa1□□□□□ -2.25
RTR1YER139C YPR147CQ06522 304 aaKnown RBP1□□□□□ -2.25
RTR1YER139C YOR268CQ08734 132 aa1□□□□□ -2.25
RTR1YER139C YCT1Q12235 531 aa1□□□□□ -2.25
RTR1YER139C SME1Q12330 94 aaPredicted RBP1□□□□□ -2.25
RTR1YER139C GIS3Q12418 502 aa1□□□□□ -2.25
RTR1YER139C ATG31Q12421 196 aa1□□□□□ -2.25
RTR1YER139C SNF8Q12483 233 aa1□□□□□ -2.25
RTR1YER139C NOT5Q12514 560 aaPredicted RBP1□□□□□ -2.25
RTR1YER139C DRS2P39524 1355 aa0.99□□□□□ -2.25
RTR1YER139C RHO1P06780 209 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C RPL27AP0C2H6 136 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C RPL27BP0C2H7 136 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C YBR121C-AP0C5L4 52 aa0.99□□□□□ -2.25
RTR1YER139C COS2P0CX12 379 aa0.99□□□□□ -2.25
RTR1YER139C COS3P0CX13 379 aa0.99□□□□□ -2.25
RTR1YER139C MER1P16523 270 aa0.99□□□□□ -2.25
RTR1YER139C CBF1P17106 351 aa0.99□□□□□ -2.25
RTR1YER139C YMR31P19955 123 aa0.99□□□□□ -2.25
RTR1YER139C SCO1P23833 295 aa0.99□□□□□ -2.25
RTR1YER139C PBN1P25580 416 aa0.99□□□□□ -2.25
RTR1YER139C YMR144WP40214 342 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C PRE6P40303 254 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C RFC4P40339 323 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C OTU1P43558 301 aa0.99□□□□□ -2.25
RTR1YER139C BAT2P47176 376 aaKnown RBP0.99□□□□□ -2.25
RTR1YER139C DAN1P47178 298 aa0.99□□□□□ -2.25
RTR1YER139C NBP35P52920 328 aa0.99□□□□□ -2.25
RTR1YER139C MDM34P53083 459 aa0.99□□□□□ -2.25
RTR1YER139C NSA1P53136 463 aaPredicted RBP0.99□□□□□ -2.25
RTR1YER139C NOP13P53883 403 aaKnown RBP RIP-Chip data0.99□□□□□ -2.25not detected
RTR1YER139C AAH1P53909 347 aa0.99□□□□□ -2.25
RTR1YER139C MRPS17Q03246 237 aaPredicted RBP0.99□□□□□ -2.25
RTR1YER139C GEP5Q12393 293 aa0.99□□□□□ -2.25
RTR1YER139C EMC6Q12431 108 aa0.99□□□□□ -2.25
RTR1YER139C YPL247CQ12523 523 aa0.99□□□□□ -2.25
RTR1YER139C TCP1P12612 559 aaKnown RBP0.98□□□□□ -2.25
RTR1YER139C CCA1P21269 546 aa0.98□□□□□ -2.25
RTR1YER139C PPH21P23594 369 aa0.98□□□□□ -2.25
Retrieved 100 of 5,963 RNA–protein pairs in 25.4 ms