RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	PRE8	P23639	250 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	NTF2	P33331	125 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	MRPL24	P36525	258 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	LSM2	P38203	95 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	TSL1	P38427	1098 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	MET30	P39014	640 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YFL052W	P43551	465 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	RIB4	P50861	169 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YIP4	P53093	235 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	THG1	P53215	237 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YNL092W	P53934	400 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YNL034W	P53963	612 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YNL018C	P53976	612 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	SKO1	Q02100	647 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	VBA1	Q04301	562 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	SDH7	Q04401	133 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	AVO2	Q04749	426 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	BSP1	Q06604	576 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	TMS1	Q12116	473 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	NDJ1	Q12366	352 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	CDC33	P07260	213 aa	Known RBP	4.06	□□□□□ -1.76
PRP28	YDR243C	YEL076C-A	P0CX16	216 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	YLR464W	P0CX17	216 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	SPT15	P13393	240 aa	Known RBP	4.06	□□□□□ -1.76
PRP28	YDR243C	ATP10	P18496	279 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	ANB1	P19211	157 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	SGF29	P25554	259 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	FEN2	P25621	512 aa	Known RBP	4.06	□□□□□ -1.76
PRP28	YDR243C	MIG1	P27705	504 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	GAC1	P28006	793 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	MRP17	P28778	131 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
PRP28	YDR243C	UTR5	P32630	166 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	FMT1	P32785	401 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	SFK1	P35735	353 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	DAD2	P36162	133 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	YBL029W	P38201	376 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	LDB7	P38210	180 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	YEL076C	P39971	216 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	YIL012W	P40551	113 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	FKH2	P41813	862 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	TAH11	P47112	604 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	GPG1	P53130	126 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	FRE4	P53746	719 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	RSM23	Q01163	450 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	GIP3	Q03016	1276 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	YMR160W	Q03823	816 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	MTQ2	Q03920	221 aa	Predicted RBP	4.06	□□□□□ -1.76
PRP28	YDR243C	PAU23	Q07987	124 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	NBP2	Q12163	236 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	PAU17	Q12370	124 aa		4.06	□□□□□ -1.76
PRP28	YDR243C	ADE4	P04046	510 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	ILV5	P06168	395 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	RPS28B	P0C0X0	67 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	YML003W	P0CF16	290 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	RPL1A	P0CX43	217 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	RPL1B	P0CX44	217 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	BGL2	P15703	313 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	MEK1	P24719	497 aa	Predicted RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	SLM5	P25345	492 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	PBN1	P25580	416 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	OCH1	P31755	480 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	GLC7	P32598	312 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	YKR073C	P36153	106 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	CUE1	P38428	203 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	DOG2	P38773	246 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	SRP14	P38985	146 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	ISC1	P40015	477 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	LTP1	P40347	161 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	PMT3	P47190	753 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	BUL1	P48524	976 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	MIC26	P50087	233 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	NIF3	P53081	288 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	SAY1	P53324	424 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	TMA23	Q03525	211 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	GAS3	Q03655	524 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	FIT1	Q04433	528 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	MRPL1	Q04599	285 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	IRC13	Q08630	104 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	NUS1	Q12063	375 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	YRA1	Q12159	226 aa	Known RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	YDL177C	Q12257	170 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	GEP5	Q12393	293 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	SFG1	Q12507	346 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.05	□□□□□ -1.76
PRP28	YDR243C	MHF2	Q3E829	80 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	MOT1	P32333	1867 aa		4.05	□□□□□ -1.76
PRP28	YDR243C	COX3	P00420	269 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	HIS1	P00498	297 aa	Known RBP	4.04	□□□□□ -1.76
PRP28	YDR243C	PAI3	P01094	68 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	RIP1	P08067	215 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	PUT1	P09368	476 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	MAK31	P23059	88 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	TMT1	P32643	299 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	TIM23	P32897	222 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	CBP4	P37267	147 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	AVT7	P40501	490 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	GTS1	P40956	396 aa		4.04	□□□□□ -1.76
PRP28	YDR243C	OYE3	P41816	400 aa	Predicted RBP	4.04	□□□□□ -1.76
PRP28	YDR243C	YHC3	P47040	408 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.5 ms