RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W TEM1P38987 245 aa2.18□□□□□ -2.06
SHR3YDL212W BNA6P43619 295 aa2.18□□□□□ -2.06
SHR3YDL212W YJL027CP47063 138 aaPredicted RBP2.18□□□□□ -2.06
SHR3YDL212W YGL034CP53186 121 aa2.18□□□□□ -2.06
SHR3YDL212W RRN5Q02983 363 aa2.18□□□□□ -2.06
SHR3YDL212W YHR086W-AQ3E746 53 aa2.18□□□□□ -2.06
SHR3YDL212W JEN1P36035 616 aa2.17□□□□□ -2.06
SHR3YDL212W YJL016WP47072 561 aa2.17□□□□□ -2.06
SHR3YDL212W ASI3P53983 676 aa2.17□□□□□ -2.06
SHR3YDL212W YDR209CQ03480 137 aa2.17□□□□□ -2.06
SHR3YDL212W BOP2Q06150 570 aa2.17□□□□□ -2.06
SHR3YDL212W COQ10Q08058 207 aa2.17□□□□□ -2.06
SHR3YDL212W MSH5Q12175 901 aa2.17□□□□□ -2.06
SHR3YDL212W RNA15P25299 296 aaPredicted RBP2.16□□□□□ -2.06
SHR3YDL212W MAL32P38158 584 aa2.16□□□□□ -2.06
SHR3YDL212W BAT2P47176 376 aaKnown RBP2.16□□□□□ -2.06
SHR3YDL212W MAL12P53341 584 aa2.16□□□□□ -2.06
SHR3YDL212W ATG17Q06410 417 aa2.16□□□□□ -2.06
SHR3YDL212W YPR011CQ12251 326 aa2.16□□□□□ -2.06
SHR3YDL212W GEP5Q12393 293 aa2.16□□□□□ -2.06
SHR3YDL212W ATG31Q12421 196 aa2.16□□□□□ -2.06
SHR3YDL212W YKR104WP0CE69 306 aa2.15□□□□□ -2.07
SHR3YDL212W TCP1P12612 559 aaKnown RBP2.15□□□□□ -2.07
SHR3YDL212W RNP1P32385 249 aa2.15□□□□□ -2.07
SHR3YDL212W DRE2P36152 348 aa2.15□□□□□ -2.07
SHR3YDL212W GRE3P38715 327 aaKnown RBP RIP-Chip data2.15□□□□□ -2.07not detected
SHR3YDL212W GOS1P38736 223 aa2.15□□□□□ -2.07
SHR3YDL212W MRPL49P40858 161 aaPredicted RBP2.15□□□□□ -2.07
SHR3YDL212W SNZ3P43545 298 aa2.15□□□□□ -2.07
SHR3YDL212W JHD2P47156 728 aaPredicted RBP2.15□□□□□ -2.07
SHR3YDL212W YPR098CQ06089 161 aa2.15□□□□□ -2.07
SHR3YDL212W YPR147CQ06522 304 aaKnown RBP2.15□□□□□ -2.07
SHR3YDL212W CSM4Q08955 156 aa2.15□□□□□ -2.07
SHR3YDL212W PST1Q12355 444 aa2.15□□□□□ -2.07
SHR3YDL212W YBL008W-AQ3E821 79 aa2.15□□□□□ -2.07
SHR3YDL212W SPT8P38915 602 aa2.14□□□□□ -2.07
SHR3YDL212W USE1P53146 245 aa2.14□□□□□ -2.07
SHR3YDL212W MRH4P53166 561 aa2.14□□□□□ -2.07
SHR3YDL212W SRL4Q03085 281 aa2.14□□□□□ -2.07
SHR3YDL212W EMP46Q12396 444 aa2.14□□□□□ -2.07
SHR3YDL212W YCR102CP25608 368 aa2.13□□□□□ -2.07
SHR3YDL212W THO1P40040 218 aaKnown RBP2.13□□□□□ -2.07
SHR3YDL212W SNZ2P53824 298 aa2.13□□□□□ -2.07
SHR3YDL212W RSM10Q03201 203 aa2.13□□□□□ -2.07
SHR3YDL212W GRX3Q03835 250 aa2.13□□□□□ -2.07
SHR3YDL212W PAM18Q07914 168 aa2.13□□□□□ -2.07
SHR3YDL212W RRP40Q08285 240 aaKnown RBP2.13□□□□□ -2.07
SHR3YDL212W SLD7Q08457 257 aa2.13□□□□□ -2.07
SHR3YDL212W YCT1Q12235 531 aa2.13□□□□□ -2.07
SHR3YDL212W MED4Q12343 284 aa2.13□□□□□ -2.07
SHR3YDL212W EMC6Q12431 108 aa2.13□□□□□ -2.07
SHR3YDL212W SWI1P09547 1314 aa2.13□□□□□ -2.07
SHR3YDL212W SGA1P08019 549 aa2.12□□□□□ -2.07
SHR3YDL212W SEC22P22214 214 aa2.12□□□□□ -2.07
SHR3YDL212W YOR062CP36025 268 aa2.12□□□□□ -2.07
SHR3YDL212W BFR1P38934 470 aaKnown RBP RIP-Chip data2.12□□□□□ -2.07not detected
SHR3YDL212W TIF34P40217 347 aaKnown RBP2.12□□□□□ -2.07
SHR3YDL212W HOC1P47124 396 aa2.12□□□□□ -2.07
SHR3YDL212W TIM11P81449 96 aaPredicted RBP2.12□□□□□ -2.07
SHR3YDL212W TLG1Q03322 224 aa2.12□□□□□ -2.07
SHR3YDL212W SPG4Q04438 115 aa2.12□□□□□ -2.07
SHR3YDL212W YDR124WQ04608 324 aa2.12□□□□□ -2.07
SHR3YDL212W YLR179CQ06252 201 aaKnown RBP2.12□□□□□ -2.07
SHR3YDL212W SGE1P33335 543 aa2.11□□□□□ -2.07
SHR3YDL212W FZO1P38297 855 aa2.11□□□□□ -2.07
SHR3YDL212W YHL026CP38740 315 aa2.11□□□□□ -2.07
SHR3YDL212W FMC1P40491 155 aa2.11□□□□□ -2.07
SHR3YDL212W YJR079WP47126 109 aa2.11□□□□□ -2.07
SHR3YDL212W PET117Q02771 107 aa2.11□□□□□ -2.07
SHR3YDL212W GOT1Q03554 138 aa2.11□□□□□ -2.07
SHR3YDL212W RNH1Q04740 348 aa2.11□□□□□ -2.07
SHR3YDL212W SYC1Q08553 188 aaPredicted RBP2.11□□□□□ -2.07
SHR3YDL212W YOR186WQ08560 144 aa2.11□□□□□ -2.07
SHR3YDL212W YHB1P39676 399 aaKnown RBP2.1□□□□□ -2.07
SHR3YDL212W RHO3Q00245 231 aaKnown RBP2.1□□□□□ -2.07
SHR3YDL212W PEX12Q04370 399 aa2.1□□□□□ -2.07
SHR3YDL212W RRS1Q08746 203 aaKnown RBP2.1□□□□□ -2.07
SHR3YDL212W CFT1Q06632 1357 aaKnown RBP2.1□□□□□ -2.07
SHR3YDL212W RPO26P20435 155 aa2.09□□□□□ -2.07
SHR3YDL212W YKL075CP36083 450 aa2.09□□□□□ -2.07
SHR3YDL212W LDB7P38210 180 aa2.09□□□□□ -2.07
SHR3YDL212W SSH1P38353 490 aaKnown RBP2.09□□□□□ -2.07
SHR3YDL212W YER189WP40104 122 aa2.09□□□□□ -2.07
SHR3YDL212W MRPL50P53724 139 aa2.09□□□□□ -2.07
SHR3YDL212W YNL046WP53956 172 aa2.09□□□□□ -2.07
SHR3YDL212W KRE28Q04431 385 aa2.09□□□□□ -2.07
SHR3YDL212W SNU23Q12368 194 aaPredicted RBP2.09□□□□□ -2.07
SHR3YDL212W ADH3P07246 375 aaKnown RBP2.08□□□□□ -2.08
SHR3YDL212W RPS5P26783 225 aaKnown RBP2.08□□□□□ -2.08
SHR3YDL212W RCN1P36054 211 aa2.08□□□□□ -2.08
SHR3YDL212W MRPL39P36533 70 aa2.08□□□□□ -2.08
SHR3YDL212W YHR127WP38833 243 aaKnown RBP2.08□□□□□ -2.08
SHR3YDL212W OST2P46964 130 aa2.08□□□□□ -2.08
SHR3YDL212W NUP84P52891 726 aa2.08□□□□□ -2.08
SHR3YDL212W CWC21Q03375 135 aaKnown RBP2.08□□□□□ -2.08
SHR3YDL212W SEI1Q06058 285 aa2.08□□□□□ -2.08
SHR3YDL212W BBP1Q12365 385 aa2.08□□□□□ -2.08
SHR3YDL212W YPL229WQ99395 206 aa2.08□□□□□ -2.08
SHR3YDL212W YLR462WO13556 202 aa2.07□□□□□ -2.08
SHR3YDL212W MATALPHA1P0CY06 175 aa2.07□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 30.7 ms