RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 NDOR1Q9UHB4 597 aa11.69□□□□□ -0.54
MSH6-201ENST00000234420 GON4LQ3T8J9 2241 aa11.69□□□□□ -0.54
MSH6-201ENST00000234420 ENDOD1O94919 500 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 RARBP10826 455 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 NUP62P37198 522 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 NLRP11P59045 1033 aaKnown RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 CAMKK1Q8N5S9 505 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 UXS1Q8NBZ7 420 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 RWDD2AQ9UIY3 292 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 PNMA8BQ9ULN7 279 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 KDM5BQ9UGL1 1544 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 ZMYM3Q14202 1370 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 CYP2D7A0A087X1C5 515 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 PSMA2P25787 234 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 GPR141Q7Z602 305 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 DENND6AQ8IWF6 608 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 ATP11CQ8NB49 1132 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 COG1Q8WTW3 980 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 NPHS2Q9NP85 383 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 HACL1Q9UJ83 578 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 FBXO10Q9UK96 956 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 LRRC24Q50LG9 513 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 DNAJC24Q6P3W2 148 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 CCDC60Q8IWA6 550 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 SYMPKQ92797 1274 aaKnown RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 MAGED4Q96JG8 741 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 CCT8L2Q96SF2 557 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 ZNF839A8K0R7 811 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 PFKFB2O60825 505 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 TRIM13O60858 407 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 SOAT1P35610 550 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 KRT77Q7Z794 578 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 CAPSLQ8WWF8 208 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 TTC7AQ9ULT0 858 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 SOS1Q07889 1333 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 MAGEA13PA6NCF6 341 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 KRT6AP02538 564 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 KRT6BP04259 564 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 KRT6CP48668 564 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 TWF1Q12792 350 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 TOGARAM2Q6ZUX3 1019 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 FAM96AQ9H5X1 160 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 MFAP3P55082 362 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 MAPK11Q15759 364 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 TTC33Q6PID6 262 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 CLEC4MQ9H2X3 399 aaPredicted RBP11.68□□□□□ -0.54
MSH6-201ENST00000234420 PDP2Q9P2J9 529 aa11.68□□□□□ -0.54
MSH6-201ENST00000234420 RNF103O00237 685 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ATP1A1P05023 1023 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 SPP2Q13103 211 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 TTLL4Q14679 1199 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 PCDHGA3Q9Y5H0 932 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 PODXLO00592 558 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ETFBP38117 255 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 KRT72Q14CN4 511 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 SGO1Q5FBB7 561 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 DDIASQ8IXT1 998 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ZNF786Q8N393 782 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 TSEN34Q9BSV6 310 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 MTMR6Q9Y217 621 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 LAMC3Q9Y6N6 1575 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ADGRA2Q96PE1 1338 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 PHF20L1A8MW92 1017 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 HSPA9P38646 679 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 KIF12Q96FN5 646 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 NOD2Q9HC29 1040 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ARL2BPQ9Y2Y0 163 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 SOS2Q07890 1332 aaPredicted RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 YEATS2Q9ULM3 1422 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 CDC40O60508 579 aaKnown RBP eCLIP11.67□□□□□ -0.549e-6■■■□□ 15.9
MSH6-201ENST00000234420 ZBED1O96006 694 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ARMCX4Q5H9R4 360 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 GOLGA8TH3BQL2 631 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 OTUD4Q01804 1114 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 KRR1Q13601 381 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 ANKS6Q68DC2 871 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 UTS2BQ765I0 119 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 COMMD2Q86X83 199 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 FOXP4Q8IVH2 680 aaPredicted RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 SH2D3CQ8N5H7 860 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 RMDN3Q96TC7 470 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 REXO4Q9GZR2 422 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 RPAP3Q9H6T3 665 aaPredicted RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 FANCEQ9HB96 536 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 SGSM2O43147 1006 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 PALMO75781 387 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ATP12AP54707 1039 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 CNGA2Q16280 664 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 HAUS6Q7Z4H7 955 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 TAF8Q7Z7C8 310 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 SH3TC2Q8TF17 1288 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 HASPINQ8TF76 798 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 NT5C1BQ96P26 610 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 SCN3BQ9NY72 215 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 MRPL39Q9NYK5 338 aaKnown RBP11.67□□□□□ -0.54
MSH6-201ENST00000234420 HPS5Q9UPZ3 1129 aa11.67□□□□□ -0.54
MSH6-201ENST00000234420 ERBB4Q15303 1308 aa11.66□□□□□ -0.54
MSH6-201ENST00000234420 E2F8A0AVK6 867 aa11.66□□□□□ -0.54
MSH6-201ENST00000234420 PPM1NQ8N819 430 aa11.66□□□□□ -0.54
MSH6-201ENST00000234420 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms