RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 PNMA6AP0CW24 399 aaPredicted RBP19.6■□□□□ 0.73
VIM-201ENST00000224237 TNFSF9P41273 254 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 AP3M2P53677 418 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 ADAM17P78536 824 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 SEZ6Q53EL9 994 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 LMBRD2Q68DH5 695 aaPredicted RBP19.6■□□□□ 0.73
VIM-201ENST00000224237 PPM1KQ8N3J5 372 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 FAM81BQ96LP2 452 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 LACRTQ9GZZ8 138 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 SPC25Q9HBM1 224 aa19.6■□□□□ 0.73
VIM-201ENST00000224237 RCCD1A6NED2 376 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 PGK1P00558 417 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 CYP2C9P11712 490 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 CCND3P30281 292 aaPredicted RBP19.59■□□□□ 0.73
VIM-201ENST00000224237 GTF2F1P35269 517 aaKnown RBP eCLIP19.59■□□□□ 0.73
VIM-201ENST00000224237 MFAP3P55082 362 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 ZNF569Q5MCW4 686 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 TDRD10Q5VZ19 366 aaKnown RBP19.59■□□□□ 0.73
VIM-201ENST00000224237 WDR49Q8IV35 697 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 CDT1Q9H211 546 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 TRIM10Q9UDY6 481 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 BRCA2P51587 3418 aa19.59■□□□□ 0.73
VIM-201ENST00000224237 PTPRJQ12913 1337 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 A0A087X0T9 212 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 GPR25O00155 361 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 PJA2O43164 708 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 ERLIN2O94905 339 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 FAM228BP0C875 321 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 RARBP10826 455 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 GNAT1P11488 350 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 PRKAR2AP13861 404 aaKnown RBP19.58■□□□□ 0.73
VIM-201ENST00000224237 BIRC3Q13489 604 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 BMS1Q14692 1282 aaKnown RBP19.58■□□□□ 0.73
VIM-201ENST00000224237 C10orf76Q5T2E6 689 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 EEF1DP3Q658K8 133 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 FAM84AQ96KN4 292 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 FAM49AQ9H0Q0 323 aaPredicted RBP19.58■□□□□ 0.73
VIM-201ENST00000224237 UPF3AQ9H1J1 476 aaKnown RBP19.58■□□□□ 0.73
VIM-201ENST00000224237 SRRDQ9UH36 339 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 TFR2Q9UP52 801 aa19.58■□□□□ 0.73
VIM-201ENST00000224237 FOXN3O00409 490 aaPredicted RBP19.58■□□□□ 0.72
VIM-201ENST00000224237 MCF2P10911 925 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 HOXD10P28358 340 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 PIK3CAP42336 1068 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 GCNT1Q02742 428 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 ENOSF1Q7L5Y1 443 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 THNSL1Q8IYQ7 743 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 HELQQ8TDG4 1101 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 C1orf112Q9NSG2 853 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 DNAH12Q6ZR08 3092 aa19.58■□□□□ 0.72
VIM-201ENST00000224237 C17orf102A2RUQ5 167 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 HLA-DRAP01903 254 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 ARF4P18085 180 aaPredicted RBP19.57■□□□□ 0.72
VIM-201ENST00000224237 NKX3-2P78367 333 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 ZNF200P98182 395 aaPredicted RBP19.57■□□□□ 0.72
VIM-201ENST00000224237 PCBP1Q15365 356 aaKnown RBP eCLIP19.57■□□□□ 0.723e-21■■□□□ 13.3
VIM-201ENST00000224237 KYAT1Q16773 422 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 KIZQ2M2Z5 673 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 WDR44Q5JSH3 913 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 GNASQ5JWF2 1037 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 CDR2LQ86X02 465 aaPredicted RBP19.57■□□□□ 0.72
VIM-201ENST00000224237 SLC35F6Q8N357 371 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 C7orf31Q8N865 590 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 KREMEN1Q96MU8 473 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 MTG1Q9BT17 334 aaPredicted RBP19.57■□□□□ 0.72
VIM-201ENST00000224237 GCOM2Q9BZD3 368 aaPredicted RBP19.57■□□□□ 0.72
VIM-201ENST00000224237 ADAMTS10Q9H324 1103 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 PDZD7Q9H5P4 517 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 L2HGDHQ9H9P8 463 aa19.57■□□□□ 0.72
VIM-201ENST00000224237 THSD7BQ9C0I4 1608 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 TSPAN1O60635 241 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 GPR32O75388 356 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 HOXC8P31273 242 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 POU5F1Q01860 360 aaKnown RBP19.56■□□□□ 0.72
VIM-201ENST00000224237 TMEM62Q0P6H9 643 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 RUFY4Q6ZNE9 571 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 SHC3Q92529 594 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 KAT5Q92993 513 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 SECISBP2LQ93073 1101 aaKnown RBP19.56■□□□□ 0.72
VIM-201ENST00000224237 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.56■□□□□ 0.723e-13■■■■□ 19.8
VIM-201ENST00000224237 TRIP12Q14669 1992 aaPredicted RBP19.56■□□□□ 0.72
VIM-201ENST00000224237 ATP8B3O60423 1300 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 ZNF710Q8N1W2 664 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 OR5B17Q8NGF7 314 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 CPB2Q96IY4 423 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 ADPGKQ9BRR6 497 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 RPF1Q9H9Y2 349 aaKnown RBP19.56■□□□□ 0.72
VIM-201ENST00000224237 HDAC6Q9UBN7 1215 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 NAGPAQ9UK23 515 aa19.56■□□□□ 0.72
VIM-201ENST00000224237 CTAGE9A4FU28 777 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 TREHO43280 583 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 URI1O94763 535 aaPredicted RBP19.55■□□□□ 0.72
VIM-201ENST00000224237 IL18RAPO95256 599 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 VNN1O95497 513 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 NAB2Q15742 525 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 ALKBH5Q6P6C2 394 aaKnown RBP19.55■□□□□ 0.72
VIM-201ENST00000224237 FAM71AQ8IYT1 594 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 CEP120Q8N960 986 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 FAM212AQ96EL1 285 aa19.55■□□□□ 0.72
VIM-201ENST00000224237 SYT11Q9BT88 431 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms