RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C PER33Q12144 273 aa0.15□□□□□ -2.39
NIP1YMR309C SMT3Q12306 101 aaKnown RBP0.15□□□□□ -2.39
NIP1YMR309C BBP1Q12365 385 aa0.15□□□□□ -2.39
NIP1YMR309C DCN1Q12395 269 aa0.15□□□□□ -2.39
NIP1YMR309C YHR032W-AP0C5N6 59 aa0.15□□□□□ -2.39
NIP1YMR309C VMA2P16140 517 aaKnown RBP0.15□□□□□ -2.39
NIP1YMR309C SCL1P21243 252 aaKnown RBP0.15□□□□□ -2.39
NIP1YMR309C GPI12P23797 304 aa0.15□□□□□ -2.39
NIP1YMR309C PET18P25362 215 aa0.15□□□□□ -2.39
NIP1YMR309C PEX3P28795 441 aa0.15□□□□□ -2.39
NIP1YMR309C RCN1P36054 211 aa0.15□□□□□ -2.39
NIP1YMR309C UIP5P36137 443 aa0.15□□□□□ -2.39
NIP1YMR309C YBR219CP38317 127 aa0.15□□□□□ -2.39
NIP1YMR309C SSO2P39926 295 aa0.15□□□□□ -2.39
NIP1YMR309C AGP3P43548 558 aa0.15□□□□□ -2.39
NIP1YMR309C OST2P46964 130 aa0.15□□□□□ -2.39
NIP1YMR309C MAL13P53338 473 aa0.15□□□□□ -2.39
NIP1YMR309C ASI3P53983 676 aa0.15□□□□□ -2.39
NIP1YMR309C SFH1Q06168 426 aa0.15□□□□□ -2.39
NIP1YMR309C SEC10Q06245 871 aa0.15□□□□□ -2.39
NIP1YMR309C YAL064W-BO13512 126 aa0.14□□□□□ -2.39
NIP1YMR309C RAS2P01120 322 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C RPL4AP10664 362 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C CCA1P21269 546 aa0.14□□□□□ -2.39
NIP1YMR309C PPH21P23594 369 aa0.14□□□□□ -2.39
NIP1YMR309C YGL010WP25338 174 aa0.14□□□□□ -2.39
NIP1YMR309C VMA11P32842 164 aa0.14□□□□□ -2.39
NIP1YMR309C RPC25P35718 212 aa0.14□□□□□ -2.39
NIP1YMR309C HEK2P38199 381 aaKnown RBP RIP-Chip data0.14□□□□□ -2.39 RIP-Chip
NIP1YMR309C YHR022CP38763 256 aa0.14□□□□□ -2.39
NIP1YMR309C YER135CP40082 130 aa0.14□□□□□ -2.39
NIP1YMR309C RPL4BP49626 362 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C RIB4P50861 169 aaPredicted RBP0.14□□□□□ -2.39
NIP1YMR309C YGR219WP53307 113 aa0.14□□□□□ -2.39
NIP1YMR309C TRM44Q02648 567 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C SDC1Q03323 175 aa0.14□□□□□ -2.39
NIP1YMR309C MRPS8Q03799 155 aa0.14□□□□□ -2.39
NIP1YMR309C EMI1Q04406 187 aa0.14□□□□□ -2.39
NIP1YMR309C YLR179CQ06252 201 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C MEU1Q07938 337 aaKnown RBP RIP-Chip data0.14□□□□□ -2.39not detected
NIP1YMR309C YOS9Q99220 542 aa0.14□□□□□ -2.39
NIP1YMR309C ATP6P00854 259 aa0.14□□□□□ -2.39
NIP1YMR309C RPC40P07703 335 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C MDH3P32419 343 aaKnown RBP RIP-Chip data0.14□□□□□ -2.39not detected
NIP1YMR309C PHO88P38264 188 aaPredicted RBP0.14□□□□□ -2.39
NIP1YMR309C HIS2P38635 335 aa0.14□□□□□ -2.39
NIP1YMR309C MNN9P39107 395 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C PRM9P39551 298 aa0.14□□□□□ -2.39
NIP1YMR309C ARC15P40518 154 aaRIP-Chip data0.14□□□□□ -2.39not detected
NIP1YMR309C JHD2P47156 728 aaPredicted RBP0.14□□□□□ -2.39
NIP1YMR309C IBA57P47158 497 aa0.14□□□□□ -2.39
NIP1YMR309C YGR026WP53217 278 aa0.14□□□□□ -2.39
NIP1YMR309C DBP6P53734 629 aaKnown RBP0.14□□□□□ -2.39
NIP1YMR309C AAH1P53909 347 aa0.14□□□□□ -2.39
NIP1YMR309C CTF19Q02732 369 aa0.14□□□□□ -2.39
NIP1YMR309C ATC1Q04005 294 aa0.14□□□□□ -2.39
NIP1YMR309C CTR3Q06686 241 aa0.14□□□□□ -2.39
NIP1YMR309C YPR011CQ12251 326 aa0.14□□□□□ -2.39
NIP1YMR309C YBL008W-AQ3E821 79 aa0.14□□□□□ -2.39
NIP1YMR309C AI5_BETAQ9ZZX0 354 aa0.14□□□□□ -2.39
NIP1YMR309C FLO9P39712 1322 aa0.14□□□□□ -2.39
NIP1YMR309C DSF1P0CX08 502 aa0.13□□□□□ -2.39
NIP1YMR309C YNR073CP0CX09 502 aa0.13□□□□□ -2.39
NIP1YMR309C GCD2P12754 651 aaPredicted RBP0.13□□□□□ -2.39
NIP1YMR309C TRX1P22217 103 aaKnown RBP0.13□□□□□ -2.39
NIP1YMR309C YSR3P23501 404 aa0.13□□□□□ -2.39
NIP1YMR309C YBR220CP38318 560 aa0.13□□□□□ -2.39
NIP1YMR309C COS8P38723 381 aa0.13□□□□□ -2.39
NIP1YMR309C YHR125WP38831 101 aa0.13□□□□□ -2.39
NIP1YMR309C SHC1P39000 512 aa0.13□□□□□ -2.39
NIP1YMR309C RPL13BP40212 199 aaKnown RBP0.13□□□□□ -2.39
NIP1YMR309C RPL37AP49166 88 aaKnown RBP0.13□□□□□ -2.39
NIP1YMR309C ABZ2Q03266 374 aa0.13□□□□□ -2.39
NIP1YMR309C VPS20Q04272 221 aa0.13□□□□□ -2.39
NIP1YMR309C RRG8Q06109 277 aa0.13□□□□□ -2.39
NIP1YMR309C CSI2Q08054 341 aa0.13□□□□□ -2.39
NIP1YMR309C RPL13AQ12690 199 aaPredicted RBP0.13□□□□□ -2.39
NIP1YMR309C STH1P32597 1359 aa0.13□□□□□ -2.39
NIP1YMR309C RPL9AP05738 191 aaKnown RBP0.13□□□□□ -2.39
NIP1YMR309C COS2P0CX12 379 aa0.13□□□□□ -2.39
NIP1YMR309C COS3P0CX13 379 aa0.13□□□□□ -2.39
NIP1YMR309C SEC22P22214 214 aa0.13□□□□□ -2.39
NIP1YMR309C ECM13P38195 257 aa0.13□□□□□ -2.39
NIP1YMR309C ERV15P38312 142 aa0.13□□□□□ -2.39
NIP1YMR309C YHL049CP38722 271 aa0.13□□□□□ -2.39
NIP1YMR309C AVT2P39981 480 aa0.13□□□□□ -2.39
NIP1YMR309C GLE2P40066 365 aa0.13□□□□□ -2.39
NIP1YMR309C SER33P40510 469 aa0.13□□□□□ -2.39
NIP1YMR309C AGE2P40529 298 aa0.13□□□□□ -2.39
NIP1YMR309C RPL9BP51401 191 aaKnown RBP0.13□□□□□ -2.39
NIP1YMR309C YNL050CP53952 270 aa0.13□□□□□ -2.39
NIP1YMR309C BUD25P85052 153 aa0.13□□□□□ -2.39
NIP1YMR309C YMR279CQ03263 540 aa0.13□□□□□ -2.39
NIP1YMR309C VAC14Q06708 880 aa0.13□□□□□ -2.39
NIP1YMR309C AKR2Q12013 749 aa0.13□□□□□ -2.39
NIP1YMR309C STF1P01098 86 aa0.12□□□□□ -2.39
NIP1YMR309C Q0255P03881 472 aa0.12□□□□□ -2.39
NIP1YMR309C QCR8P08525 94 aa0.12□□□□□ -2.39
NIP1YMR309C GPA2P10823 449 aa0.12□□□□□ -2.39
NIP1YMR309C UGA1P17649 471 aa0.12□□□□□ -2.39
Retrieved 100 of 5,963 RNA–protein pairs in 80.1 ms