RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCD1	YDR499W	RGM1	Q00453	211 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	CTS2	Q06350	511 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	CTR3	Q06686	241 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	YPL247C	Q12523	523 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	RPL24A	P04449	155 aa	Known RBP	0.87	□□□□□ -2.27
LCD1	YDR499W	RPL26A	P05743	127 aa	Known RBP	0.87	□□□□□ -2.27
LCD1	YDR499W	DPM1	P14020	267 aa	Known RBP	0.87	□□□□□ -2.27
LCD1	YDR499W	TEM1	P38987	245 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	DSN1	P40568	576 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	YAR1	P46683	200 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	NIF3	P53081	288 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	RPL26B	P53221	127 aa	Known RBP	0.87	□□□□□ -2.27
LCD1	YDR499W	AAH1	P53909	347 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	OST6	Q03723	332 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	COX20	Q04935	205 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	VPS68	Q12016	184 aa		0.87	□□□□□ -2.27
LCD1	YDR499W	RRP36	Q12481	300 aa	Predicted RBP	0.87	□□□□□ -2.27
LCD1	YDR499W	HIS1	P00498	297 aa	Known RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	RAD10	P06838	210 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	SNF6	P18888	332 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	DPB2	P24482	689 aa	Predicted RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	GDH2	P33327	1092 aa	Known RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	YHR045W	P38775	560 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	SPT8	P38915	602 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	YJL028W	P47062	111 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	YJR146W	P47174	117 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	SLX9	P53251	210 aa	Predicted RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	CAB4	P53332	305 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	MPP6	P53725	186 aa	Predicted RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	GRH1	Q04410	372 aa	Known RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	MYO5	Q04439	1219 aa	Known RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	YMR114C	Q04471	368 aa	Known RBP	0.86	□□□□□ -2.27
LCD1	YDR499W	CDD1	Q06549	142 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	PLB3	Q08108	686 aa		0.86	□□□□□ -2.27
LCD1	YDR499W	POL30	P15873	258 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	PPH21	P23594	369 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	CLB6	P32943	380 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	DRE2	P36152	348 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	ECM13	P38195	257 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	YGP1	P38616	354 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	COG3	P40094	801 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	YJL118W	P47022	219 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	YJR012C	P47087	207 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	NBP1	P52919	319 aa	Predicted RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	MDM34	P53083	459 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	EMI1	Q04406	187 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	PEX10	Q05568	337 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	BOP2	Q06150	570 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	RDS3	Q06835	107 aa	Predicted RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	RNP1	P32385	249 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	RIB7	P33312	244 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	MAL32	P38158	584 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	MEP1	P40260	492 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	MNN5	P46982	586 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	GON7	P46984	123 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	MAL12	P53341	584 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	ALG11	P53954	548 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	EBS1	Q03466	884 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	ADH6	Q04894	360 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	KAP95	Q06142	861 aa	Known RBP	0.85	□□□□□ -2.27
LCD1	YDR499W	GEP5	Q12393	293 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	YPL119C-A	Q3E751	87 aa		0.85	□□□□□ -2.27
LCD1	YDR499W	MSF1	P08425	469 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	QRI5	P32344	111 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	PRS2	P38620	318 aa	Known RBP	0.84	□□□□□ -2.27
LCD1	YDR499W	SMB1	P40018	196 aa	Known RBP	0.84	□□□□□ -2.27
LCD1	YDR499W	RPL10	P41805	221 aa	Known RBP	0.84	□□□□□ -2.27
LCD1	YDR499W	DSK2	P48510	373 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	SUE1	Q06524	206 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	YPR011C	Q12251	326 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	PST1	Q12355	444 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	SNF8	Q12483	233 aa		0.84	□□□□□ -2.27
LCD1	YDR499W	POX1	P13711	748 aa		0.84	□□□□□ -2.28
LCD1	YDR499W	CWP1	P28319	239 aa		0.84	□□□□□ -2.28
LCD1	YDR499W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.28	not detected
LCD1	YDR499W	TIF34	P40217	347 aa	Known RBP	0.84	□□□□□ -2.28
LCD1	YDR499W	YJL016W	P47072	561 aa		0.84	□□□□□ -2.28
LCD1	YDR499W	SPO77	Q06134	477 aa		0.84	□□□□□ -2.28
LCD1	YDR499W	SLD7	Q08457	257 aa		0.84	□□□□□ -2.28
LCD1	YDR499W	INO80	P53115	1489 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	RAD3	P06839	778 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	SGA1	P08019	549 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	MRP1	P10662	321 aa	Known RBP	0.83	□□□□□ -2.28
LCD1	YDR499W	DAL82	P21705	255 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	SEC22	P22214	214 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	VPS3	P23643	1011 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	EHD3	P28817	500 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	RPT5	P33297	434 aa	Known RBP	0.83	□□□□□ -2.28
LCD1	YDR499W	MRX3	P38172	270 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	MRPL49	P40858	161 aa	Predicted RBP	0.83	□□□□□ -2.28
LCD1	YDR499W	GLG2	P47011	380 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	YGL034C	P53186	121 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	COS6	P53344	381 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	SLM2	P53955	656 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	RSM10	Q03201	203 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	CGI121	Q03705	181 aa	Known RBP	0.83	□□□□□ -2.28
LCD1	YDR499W	PEX12	Q04370	399 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	TY3A-G	Q12173	290 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	EMP46	Q12396	444 aa		0.83	□□□□□ -2.28
LCD1	YDR499W	YBL008W-A	Q3E821	79 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms