RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W COS3P0CX13 379 aa2.28□□□□□ -2.04
SHR3YDL212W RRT12P25381 491 aa2.28□□□□□ -2.04
SHR3YDL212W CAM1P29547 415 aaKnown RBP2.28□□□□□ -2.04
SHR3YDL212W RPT5P33297 434 aaKnown RBP2.28□□□□□ -2.04
SHR3YDL212W HMT1P38074 348 aa2.28□□□□□ -2.04
SHR3YDL212W ARN2P38724 620 aa2.28□□□□□ -2.04
SHR3YDL212W DDI1P40087 428 aa2.28□□□□□ -2.04
SHR3YDL212W YJR141WP47172 347 aaPredicted RBP2.28□□□□□ -2.04
SHR3YDL212W CTR3Q06686 241 aa2.28□□□□□ -2.04
SHR3YDL212W STH1P32597 1359 aa2.27□□□□□ -2.05
SHR3YDL212W SKI2P35207 1287 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
SHR3YDL212W SHC1P39000 512 aa2.27□□□□□ -2.05
SHR3YDL212W NBP1P52919 319 aaPredicted RBP2.27□□□□□ -2.05
SHR3YDL212W TIM21P53220 239 aa2.27□□□□□ -2.05
SHR3YDL212W CAB4P53332 305 aa2.27□□□□□ -2.05
SHR3YDL212W LAP3Q01532 483 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
SHR3YDL212W GRH1Q04410 372 aaKnown RBP2.27□□□□□ -2.05
SHR3YDL212W RRT8Q08219 342 aa2.27□□□□□ -2.05
SHR3YDL212W SME1Q12330 94 aaPredicted RBP2.27□□□□□ -2.05
SHR3YDL212W NOT5Q12514 560 aaPredicted RBP2.27□□□□□ -2.05
SHR3YDL212W HIS1P00498 297 aaKnown RBP2.26□□□□□ -2.05
SHR3YDL212W RPL4AP10664 362 aaKnown RBP2.26□□□□□ -2.05
SHR3YDL212W CSG2P35206 410 aa2.26□□□□□ -2.05
SHR3YDL212W YHL049CP38722 271 aa2.26□□□□□ -2.05
SHR3YDL212W YHI9P38765 294 aa2.26□□□□□ -2.05
SHR3YDL212W DAN1P47178 298 aa2.26□□□□□ -2.05
SHR3YDL212W RPL4BP49626 362 aaKnown RBP2.26□□□□□ -2.05
SHR3YDL212W MAL13P53338 473 aa2.26□□□□□ -2.05
SHR3YDL212W ATC1Q04005 294 aa2.26□□□□□ -2.05
SHR3YDL212W SUE1Q06524 206 aa2.26□□□□□ -2.05
SHR3YDL212W HEK2P38199 381 aaKnown RBP RIP-Chip data2.25□□□□□ -2.05not detected
SHR3YDL212W ISD11Q6Q560 94 aa2.25□□□□□ -2.05
SHR3YDL212W RAD10P06838 210 aa2.24□□□□□ -2.05
SHR3YDL212W MSF1P08425 469 aa2.24□□□□□ -2.05
SHR3YDL212W YUH1P35127 236 aa2.24□□□□□ -2.05
SHR3YDL212W PRS2P38620 318 aaKnown RBP2.24□□□□□ -2.05
SHR3YDL212W DSN1P40568 576 aa2.24□□□□□ -2.05
SHR3YDL212W YJR012CP47087 207 aa2.24□□□□□ -2.05
SHR3YDL212W ALG11P53954 548 aaKnown RBP2.24□□□□□ -2.05
SHR3YDL212W MYO5Q04439 1219 aaKnown RBP2.24□□□□□ -2.05
SHR3YDL212W ADH6Q04894 360 aaKnown RBP2.24□□□□□ -2.05
SHR3YDL212W YOL107WQ12239 342 aa2.24□□□□□ -2.05
SHR3YDL212W RSR1P13856 272 aa2.23□□□□□ -2.05
SHR3YDL212W DAL82P21705 255 aa2.23□□□□□ -2.05
SHR3YDL212W EBS1Q03466 884 aaKnown RBP2.23□□□□□ -2.05
SHR3YDL212W YOR283WQ12040 230 aaKnown RBP2.23□□□□□ -2.05
SHR3YDL212W YPL150WQ12152 901 aa2.23□□□□□ -2.05
SHR3YDL212W YEL009C-AA0A023PZF2 135 aa2.22□□□□□ -2.05
SHR3YDL212W MRP1P10662 321 aaKnown RBP2.22□□□□□ -2.05
SHR3YDL212W EHD3P28817 500 aa2.22□□□□□ -2.05
SHR3YDL212W QRI5P32344 111 aa2.22□□□□□ -2.05
SHR3YDL212W BIG1P38813 335 aa2.22□□□□□ -2.05
SHR3YDL212W GON7P46984 123 aa2.22□□□□□ -2.05
SHR3YDL212W SLM2P53955 656 aa2.22□□□□□ -2.05
SHR3YDL212W SDO1Q07953 250 aaKnown RBP2.22□□□□□ -2.05
SHR3YDL212W BTS1Q12051 335 aa2.22□□□□□ -2.05
SHR3YDL212W YPL119C-AQ3E751 87 aa2.22□□□□□ -2.05
SHR3YDL212W CWP1P28319 239 aa2.21□□□□□ -2.06
SHR3YDL212W BMH1P29311 267 aaKnown RBP2.21□□□□□ -2.06
SHR3YDL212W PRS4P38063 326 aaPredicted RBP2.21□□□□□ -2.06
SHR3YDL212W SMB1P40018 196 aaKnown RBP2.21□□□□□ -2.06
SHR3YDL212W RPL10P41805 221 aaKnown RBP2.21□□□□□ -2.06
SHR3YDL212W AGX1P43567 385 aa2.21□□□□□ -2.06
SHR3YDL212W YJL028WP47062 111 aa2.21□□□□□ -2.06
SHR3YDL212W SLX9P53251 210 aaPredicted RBP2.21□□□□□ -2.06
SHR3YDL212W AAH1P53909 347 aa2.21□□□□□ -2.06
SHR3YDL212W PEX10Q05568 337 aa2.21□□□□□ -2.06
SHR3YDL212W YPL247CQ12523 523 aa2.21□□□□□ -2.06
SHR3YDL212W SCO1P23833 295 aa2.2□□□□□ -2.06
SHR3YDL212W NRG2P38082 220 aa2.2□□□□□ -2.06
SHR3YDL212W MRX3P38172 270 aa2.2□□□□□ -2.06
SHR3YDL212W YHR045WP38775 560 aa2.2□□□□□ -2.06
SHR3YDL212W COG3P40094 801 aa2.2□□□□□ -2.06
SHR3YDL212W GLG2P47011 380 aa2.2□□□□□ -2.06
SHR3YDL212W NIF3P53081 288 aa2.2□□□□□ -2.06
SHR3YDL212W YNL134CP53912 376 aaKnown RBP2.2□□□□□ -2.06
SHR3YDL212W EMI1Q04406 187 aa2.2□□□□□ -2.06
SHR3YDL212W YMR114CQ04471 368 aaKnown RBP2.2□□□□□ -2.06
SHR3YDL212W SPO77Q06134 477 aa2.2□□□□□ -2.06
SHR3YDL212W TY3A-GQ12173 290 aa2.2□□□□□ -2.06
SHR3YDL212W YOR029WQ12243 111 aa2.2□□□□□ -2.06
SHR3YDL212W SMT3Q12306 101 aaKnown RBP2.2□□□□□ -2.06
SHR3YDL212W TY3A-IQ99219 290 aa2.2□□□□□ -2.06
SHR3YDL212W RAD3P06839 778 aa2.19□□□□□ -2.06
SHR3YDL212W POX1P13711 748 aa2.19□□□□□ -2.06
SHR3YDL212W PPH21P23594 369 aa2.19□□□□□ -2.06
SHR3YDL212W SFC1P33303 322 aa2.19□□□□□ -2.06
SHR3YDL212W GDH2P33327 1092 aaKnown RBP2.19□□□□□ -2.06
SHR3YDL212W ECM13P38195 257 aa2.19□□□□□ -2.06
SHR3YDL212W FCY21P40039 528 aa2.19□□□□□ -2.06
SHR3YDL212W MDM34P53083 459 aa2.19□□□□□ -2.06
SHR3YDL212W COS6P53344 381 aa2.19□□□□□ -2.06
SHR3YDL212W CTF19Q02732 369 aa2.19□□□□□ -2.06
SHR3YDL212W DCR2Q05924 578 aa2.19□□□□□ -2.06
SHR3YDL212W YLR173WQ06247 608 aa2.19□□□□□ -2.06
SHR3YDL212W SNF8Q12483 233 aa2.19□□□□□ -2.06
SHR3YDL212W VPS3P23643 1011 aa2.18□□□□□ -2.06
SHR3YDL212W DPB2P24482 689 aaPredicted RBP2.18□□□□□ -2.06
SHR3YDL212W HOM6P31116 359 aaKnown RBP2.18□□□□□ -2.06
SHR3YDL212W YBR096WP38256 230 aa2.18□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 52.5 ms