RNA–Protein interactions for RNA: ENST00000578178.5

PPP4R1-208, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 468 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-208	ENST00000578178	SOD2	P04179	222 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	UROD	P06132	367 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	NCKAP1L	P55160	1127 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	STRN3	Q13033	797 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TUSC3	Q13454	348 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	DHX8	Q14562	1220 aa	Known RBP	12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	MCM6	Q14566	821 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SLC39A14	Q15043	492 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	STK38	Q15208	465 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	LLGL2	Q6P1M3	1020 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	USP49	Q70CQ1	688 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	RNF168	Q8IYW5	571 aa	Predicted RBP	12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TMEM161B	Q8NDZ6	487 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	AUTS2	Q8WXX7	1259 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CASP10	Q92851	521 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	KCNN1	Q92952	543 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	EPSTI1	Q96J88	318 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TARS2	Q9BW92	718 aa	Known RBP	12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	COLEC11	Q9BWP8	271 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	STK17A	Q9UEE5	414 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CCDC39	Q9UFE4	941 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	GDA	Q9Y2T3	454 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	HCFC2	Q9Y5Z7	792 aa		12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PDCD11	Q14690	1871 aa	Known RBP	12	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ABLIM1	O14639	778 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CLASP2	O75122	1294 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TBCA	O75347	108 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	BRD1	O95696	1058 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	KRT18	P05783	430 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TH	P07101	528 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	MAPT	P10636	758 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	MCF2	P10911	925 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PROZ	P22891	400 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SSTR3	P32745	418 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	GRM5	P41594	1212 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ZNF131	P52739	623 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ZP2	Q05996	745 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ANKRD54	Q6NXT1	300 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	MPZL3	Q6UWV2	235 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ZPBP2	Q6X784	338 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ADHFE1	Q8IWW8	467 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	GJD3	Q8N144	294 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CEP120	Q8N960	986 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	KRI1	Q8N9T8	703 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TMEM87A	Q8NBN3	555 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ZNF396	Q96N95	335 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CLIC6	Q96NY7	704 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	POP1	Q99575	1024 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CCDC94	Q9BW85	323 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	EMILIN2	Q9BXX0	1053 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PARVG	Q9HBI0	331 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PTPRH	Q9HD43	1115 aa		11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	MRPL17	Q9NRX2	175 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	USP15	Q9Y4E8	981 aa	Predicted RBP	11.99	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.98	□□□□□ -0.49	4e-6	■■■■■ 34.5
PPP4R1-208	ENST00000578178	CASTOR2	A6NHX0	329 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178		F8W810	466 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178		K7ENM7	598 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TOM1L1	O75674	476 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	EFEMP2	O95967	443 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	F13A1	P00488	732 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ZSCAN22	P10073	491 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	HARS	P12081	509 aa	Known RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	HOXB8	P17481	243 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SCP2	P22307	547 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	GLUD2	P49448	558 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	YARS	P54577	528 aa	Known RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	NAB2	Q15742	525 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	FUT10	Q6P4F1	479 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PPFIBP1	Q86W92	1011 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	LINC00301	Q8NCQ3	95 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CXCL16	Q9H2A7	254 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CD320	Q9NPF0	282 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	DZANK1	Q9NVP4	752 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ANKFY1	Q9P2R3	1169 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CACNG4	Q9UBN1	327 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ADAM28	Q9UKQ2	775 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SSX2IP	Q9Y2D8	614 aa		11.98	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PLXNA3	P51805	1871 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	C19orf67	A6NJJ6	358 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SPTLC2	O15270	562 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	LILRB3	O75022	631 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	PPP6R2	O75170	966 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	KIF4A	O95239	1232 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	YEATS4	O95619	227 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	ABCD1	P33897	745 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	DDIT3	P35638	169 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	STAT6	P42226	847 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	DSG1	Q02413	1049 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	TPRN	Q4KMQ1	711 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	GLRA4	Q5JXX5	417 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	RRAGB	Q5VZM2	374 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	SYCE2	Q6PIF2	218 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	CCDC73	Q6ZRK6	1079 aa		11.97	□□□□□ -0.49
PPP4R1-208	ENST00000578178	HAUS6	Q7Z4H7	955 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 132 ms