RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 C7orf25Q9BPX7 421 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 STRA6Q9BX79 667 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 NRDE2Q9H7Z3 1164 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ALG13Q9NP73 1137 aaKnown RBP10.26□□□□□ -0.77
LDLR-211ENST00000560173 OLFML3Q9NRN5 406 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 PANK4Q9NVE7 773 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 MIOSQ9NXC5 875 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 KLK14Q9P0G3 267 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 KANSL3Q9P2N6 904 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 ANKFY1Q9P2R3 1169 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 DNAJB4Q9UDY4 337 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 PARP2Q9UGN5 583 aa10.26□□□□□ -0.77
LDLR-211ENST00000560173 CARNS1A5YM72 827 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 GOLGA6L22H0YM25 854 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 PTGESO14684 152 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 HNRNPDLO14979 420 aaKnown RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 DDHD2O94830 711 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 GALTP07902 379 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 SLC11A1P49279 550 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 NDUFA8P51970 172 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 ASIC1P78348 528 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 AMPD3Q01432 767 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 MCL1Q07820 350 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 DSC1Q08554 894 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 COASYQ13057 564 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 NOLC1Q14978 699 aaKnown RBP eCLIP10.25□□□□□ -0.77
LDLR-211ENST00000560173 NFKBIBQ15653 356 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 CCDC85BQ15834 202 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 ZC2HC1CQ53FD0 456 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 HERC4Q5GLZ8 1057 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 SLC39A4Q6P5W5 647 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 ZBTB33Q86T24 672 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 TMEM173Q86WV6 379 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 CCDC65Q8IXS2 484 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 COLGALT2Q8IYK4 626 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 CEP57L1Q8IYX8 460 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 CEP120Q8N960 986 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 FSIP1Q8NA03 581 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 BCL7CQ8WUZ0 217 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 POF1BQ8WVV4 589 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 MRPS27Q92552 414 aaKnown RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 HVCN1Q96D96 273 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 BICD1Q96G01 975 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 ZBTB45Q96K62 511 aaPredicted RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 RPS6KC1Q96S38 1066 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 TMEM175Q9BSA9 504 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 TCHPQ9BT92 498 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 FGFBP2Q9BYJ0 223 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 GBP3Q9H0R5 595 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 CXCL16Q9H2A7 254 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 GOLPH3LQ9H4A5 285 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 MRPL44Q9H9J2 332 aaKnown RBP10.25□□□□□ -0.77
LDLR-211ENST00000560173 SPG21Q9NZD8 308 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 USP25Q9UHP3 1055 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 SERTAD1Q9UHV2 236 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 LZTS1Q9Y250 596 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 GDAQ9Y2T3 454 aa10.25□□□□□ -0.77
LDLR-211ENST00000560173 NT5C1B-RDH14C9J2C7 533 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 CLDN3O15551 220 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 MEFVO15553 781 aaPredicted RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 MYBP10242 640 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 HARSP12081 509 aaKnown RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 CASP1P29466 404 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 IRS1P35568 1242 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 SYKP43405 635 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 ALDH7A1P49419 539 aaKnown RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 LIG4P49917 911 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 CASP5P51878 434 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 GRIK3Q13003 919 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 GRAMD1CQ8IYS0 662 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 IGSF21Q96ID5 467 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 SNX27Q96L92 541 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 NECAB3Q96P71 396 aaPredicted RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 FAM193BQ96PV7 902 aaPredicted RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 CCDC94Q9BW85 323 aaPredicted RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 HAPLN2Q9GZV7 340 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 BLZF1Q9H2G9 400 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 NSUN3Q9H649 340 aaKnown RBP10.24□□□□□ -0.77
LDLR-211ENST00000560173 TBC1D7Q9P0N9 293 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 HCN4Q9Y3Q4 1203 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 ATG2AQ2TAZ0 1938 aa10.24□□□□□ -0.77
LDLR-211ENST00000560173 PLXNA4Q9HCM2 1894 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 A0A0B4J269 797 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 TISP43B9A030 160 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 ANKRD63C9JTQ0 380 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 FSCN2O14926 492 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 FAM189A1O60320 539 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 CSPG5O95196 566 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 GCNT3O95395 438 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 AFMP43652 599 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 OSTNP61366 133 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 EHHADHQ08426 723 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 KCNA1Q09470 495 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 CUL4BQ13620 913 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 ALCAMQ13740 583 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 NAB2Q15742 525 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 TPRNQ4KMQ1 711 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 XKR4Q5GH76 650 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 TCEAL5Q5H9L2 206 aa10.23□□□□□ -0.77
LDLR-211ENST00000560173 L1TD1Q5T7N2 865 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms