RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CHPFQ8IZ52 775 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 ZNF274Q96GC6 653 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 TCF25Q9BQ70 676 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 PCDHB5Q9Y5E4 795 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 UBE4BO95155 1302 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 F5H5T6 163 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 PPFIA2O75334 1257 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 EGFL8Q99944 293 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 MAGEF1Q9HAY2 307 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 BTBD18B2RXH4 712 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 MYBL2P10244 700 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 PSMA2P25787 234 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 SULT1E1P49888 294 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 TRIM28Q13263 835 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 MIB1Q86YT6 1006 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 MRPL47Q9HD33 250 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 TAB2Q9NYJ8 693 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 TET3O43151 1660 aa9.8□□□□□ -0.84
LIMCH1-202ENST00000381753 POLR2EP19388 210 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 USP41Q3LFD5 358 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 FBF1Q8TES7 1133 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 VMP1Q96GC9 406 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 EPAS1Q99814 870 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 KIAA1683Q9H0B3 1180 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 TRMT1Q9NXH9 659 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 STK39Q9UEW8 545 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 BAG5Q9UL15 447 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PRPF3O43395 683 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 TLR2O60603 784 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SNX2O60749 519 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 IL18RAPO95256 599 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 KRT1P04264 644 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 MMP3P08254 477 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CASP2P42575 452 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ZNF75DP51815 510 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ACTR2P61160 394 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PPP2R5EQ16537 467 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 LRRC8DQ7L1W4 858 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 TSTD1Q8NFU3 115 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 GIPC2Q8TF65 315 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CDK5RAP1Q96SZ6 601 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 DRC3Q9H069 523 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ZBTB40Q9NUA8 1239 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SMPD4Q9NXE4 827 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CAVIN2O95810 425 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 DNTTP04053 509 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 NNTQ13423 1086 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PEX6Q13608 980 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 GRM4Q14833 912 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 NFE2Q16621 373 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CYP26C1Q6V0L0 522 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CFAP61Q8NHU2 1237 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PPP1R13BQ96KQ4 1090 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SEZ6LQ9BYH1 1024 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 GULP1Q9UBP9 304 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SPACA6W5XKT8 324 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 TLDC2A0PJX2 215 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ACTN4O43707 911 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 MAGEC1O60732 1142 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 FGF19O95750 216 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 EPB42P16452 691 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SLC26A2P50443 739 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PAPOLAP51003 745 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 NFIAQ12857 509 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 MCM6Q14566 821 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 WDR72Q3MJ13 1102 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ERAP2Q6P179 960 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 GPD1LQ8N335 351 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 OTUD7AQ8TE49 926 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 EXT2Q93063 718 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CAPZA3Q96KX2 299 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 ZWILCHQ9H900 591 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SELENONQ9NZV5 590 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SNX14Q9Y5W7 946 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PITPNM2Q9BZ72 1349 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 PEX26Q7Z412 305 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SELENOSQ9BQE4 189 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 UNC45AQ9H3U1 944 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 SH3GLB2Q9NR46 395 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 CDY2AQ9Y6F7 541 aa9.79□□□□□ -0.84
LIMCH1-202ENST00000381753 RFX7Q2KHR2 1363 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 AFPP02771 609 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 ZNF543Q08ER8 600 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 FEZ2Q9UHY8 353 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 ZNF148Q9UQR1 794 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 RIC1Q4ADV7 1423 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 GPR75-ASB3A0A0A6YYF3 556 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 EIF3CLB5ME19 914 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 SGK1O00141 431 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 PLEKHA8P1O95397 391 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 GNG11P61952 73 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 NXNQ6DKJ4 435 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 SERPINA13PQ6UXR4 307 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 CNGA4Q8IV77 575 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 EFCAB3Q8N7B9 438 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 SAMSN1Q9NSI8 373 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 EMILIN3Q9NT22 766 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 SLC39A10Q9ULF5 831 aa9.78□□□□□ -0.84
LIMCH1-202ENST00000381753 TNFSF13BQ9Y275 285 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms