RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W CPD1P53314 239 aa2.78□□□□□ -1.96
UBP8YMR223W YNL095CP53932 642 aa2.78□□□□□ -1.96
UBP8YMR223W GPI15P53961 229 aa2.78□□□□□ -1.96
UBP8YMR223W YDR209CQ03480 137 aa2.78□□□□□ -1.96
UBP8YMR223W TRM82Q03774 444 aa2.78□□□□□ -1.96
UBP8YMR223W YML096WQ04489 525 aa2.78□□□□□ -1.96
UBP8YMR223W ARC18Q05933 178 aaKnown RBP2.78□□□□□ -1.96
UBP8YMR223W GAT3Q07928 141 aa2.78□□□□□ -1.96
UBP8YMR223W SKI7Q08491 747 aaPredicted RBP2.78□□□□□ -1.96
UBP8YMR223W RPN8Q08723 338 aaKnown RBP2.78□□□□□ -1.96
UBP8YMR223W POM33Q12164 279 aa2.78□□□□□ -1.96
UBP8YMR223W ATG34Q12292 412 aa2.78□□□□□ -1.96
UBP8YMR223W RPS28AQ3E7X9 67 aaPredicted RBP2.78□□□□□ -1.96
UBP8YMR223W MEX67Q99257 599 aaKnown RBP2.78□□□□□ -1.96
UBP8YMR223W RPL28P02406 149 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W ZWF1P11412 505 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W ARF2P19146 181 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W RNA15P25299 296 aaPredicted RBP2.77□□□□□ -1.97
UBP8YMR223W CDC10P25342 322 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W QRI5P32344 111 aa2.77□□□□□ -1.97
UBP8YMR223W MDH3P32419 343 aaKnown RBP RIP-Chip data2.77□□□□□ -1.97not detected
UBP8YMR223W MKK1P32490 508 aa2.77□□□□□ -1.97
UBP8YMR223W NTF2P33331 125 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W YAP3P38749 330 aa2.77□□□□□ -1.97
UBP8YMR223W NPT1P39683 429 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W COX15P40086 486 aa2.77□□□□□ -1.97
UBP8YMR223W YJR085CP47131 105 aaKnown RBP2.77□□□□□ -1.97
UBP8YMR223W HMS2P47175 358 aa2.77□□□□□ -1.97
UBP8YMR223W LST7P53237 242 aa2.77□□□□□ -1.97
UBP8YMR223W GTR2P53290 341 aa2.77□□□□□ -1.97
UBP8YMR223W CSM3Q04659 317 aa2.77□□□□□ -1.97
UBP8YMR223W YLR053CQ12026 108 aa2.77□□□□□ -1.97
UBP8YMR223W SFM1Q12314 213 aa2.77□□□□□ -1.97
UBP8YMR223W JLP1Q12358 412 aa2.77□□□□□ -1.97
UBP8YMR223W ORT1Q12375 292 aa2.77□□□□□ -1.97
UBP8YMR223W EMP46Q12396 444 aa2.77□□□□□ -1.97
UBP8YMR223W RAD50P12753 1312 aa2.77□□□□□ -1.97
UBP8YMR223W SAL1D6W196 494 aa2.76□□□□□ -1.97
UBP8YMR223W TPK3P05986 398 aa2.76□□□□□ -1.97
UBP8YMR223W RPL31AP0C2H8 113 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W PET54P10834 293 aa2.76□□□□□ -1.97
UBP8YMR223W DPM1P14020 267 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W TRR1P29509 319 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W PMT2P31382 759 aa2.76□□□□□ -1.97
UBP8YMR223W SPS18P32572 300 aa2.76□□□□□ -1.97
UBP8YMR223W ZRT1P32804 376 aa2.76□□□□□ -1.97
UBP8YMR223W SGE1P33335 543 aa2.76□□□□□ -1.97
UBP8YMR223W YBR096WP38256 230 aa2.76□□□□□ -1.97
UBP8YMR223W OPY1P38271 328 aa2.76□□□□□ -1.97
UBP8YMR223W LYS1P38998 373 aaRIP-Chip data2.76□□□□□ -1.97 RIP-Chip
UBP8YMR223W SHC1P39000 512 aa2.76□□□□□ -1.97
UBP8YMR223W YFH7P43591 353 aa2.76□□□□□ -1.97
UBP8YMR223W TAD2P47058 250 aa2.76□□□□□ -1.97
UBP8YMR223W MIC26P50087 233 aa2.76□□□□□ -1.97
UBP8YMR223W CDH1P53197 566 aa2.76□□□□□ -1.97
UBP8YMR223W GRX8Q05926 109 aa2.76□□□□□ -1.97
UBP8YMR223W TIM18Q08749 192 aa2.76□□□□□ -1.97
UBP8YMR223W NSL1Q12143 216 aa2.76□□□□□ -1.97
UBP8YMR223W USB1Q12208 290 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W YOR114WQ12219 294 aa2.76□□□□□ -1.97
UBP8YMR223W DCN1Q12395 269 aa2.76□□□□□ -1.97
UBP8YMR223W SIR4P11978 1358 aa2.76□□□□□ -1.97
UBP8YMR223W SKI3P17883 1432 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W TRP1P00912 224 aa2.76□□□□□ -1.97
UBP8YMR223W SPO12P17123 173 aa2.76□□□□□ -1.97
UBP8YMR223W PHO80P20052 293 aa2.76□□□□□ -1.97
UBP8YMR223W AAT2P23542 418 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W ACB1P31787 87 aa2.76□□□□□ -1.97
UBP8YMR223W UPS2P35200 230 aa2.76□□□□□ -1.97
UBP8YMR223W YKL063CP35725 167 aa2.76□□□□□ -1.97
UBP8YMR223W YKR041WP36134 250 aa2.76□□□□□ -1.97
UBP8YMR223W YPC1P38298 316 aa2.76□□□□□ -1.97
UBP8YMR223W ATG12P38316 186 aa2.76□□□□□ -1.97
UBP8YMR223W SHG1P38337 142 aa2.76□□□□□ -1.97
UBP8YMR223W GRE3P38715 327 aaKnown RBP RIP-Chip data2.76□□□□□ -1.97not detected
UBP8YMR223W CIN5P40917 295 aa2.76□□□□□ -1.97
UBP8YMR223W GDS1P41913 522 aa2.76□□□□□ -1.97
UBP8YMR223W CTK3P46963 296 aaPredicted RBP2.76□□□□□ -1.97
UBP8YMR223W PRP24P49960 444 aaKnown RBP2.76□□□□□ -1.97
UBP8YMR223W NSA1P53136 463 aaPredicted RBP2.76□□□□□ -1.97
UBP8YMR223W MAL13P53338 473 aa2.76□□□□□ -1.97
UBP8YMR223W YNR048WP53740 393 aa2.76□□□□□ -1.97
UBP8YMR223W FRE4P53746 719 aa2.76□□□□□ -1.97
UBP8YMR223W NRK1P53915 240 aa2.76□□□□□ -1.97
UBP8YMR223W YNL040WP53960 456 aaPredicted RBP2.76□□□□□ -1.97
UBP8YMR223W YPL077CQ02831 240 aa2.76□□□□□ -1.97
UBP8YMR223W CCE1Q03702 353 aa2.76□□□□□ -1.97
UBP8YMR223W VHS1Q03785 461 aa2.76□□□□□ -1.97
UBP8YMR223W YMR166CQ03829 368 aa2.76□□□□□ -1.97
UBP8YMR223W PRM6Q04705 352 aa2.76□□□□□ -1.97
UBP8YMR223W YLR036CQ07986 203 aa2.76□□□□□ -1.97
UBP8YMR223W YNG1Q08465 219 aa2.76□□□□□ -1.97
UBP8YMR223W TPI1P00942 248 aaKnown RBP2.75□□□□□ -1.97
UBP8YMR223W SSC1P0CS90 654 aaKnown RBP2.75□□□□□ -1.97
UBP8YMR223W DCC1P25559 380 aa2.75□□□□□ -1.97
UBP8YMR223W HOM6P31116 359 aaKnown RBP2.75□□□□□ -1.97
UBP8YMR223W KAR9P32526 644 aa2.75□□□□□ -1.97
UBP8YMR223W TCA17P32613 152 aa2.75□□□□□ -1.97
UBP8YMR223W CAT2P32796 670 aaKnown RBP2.75□□□□□ -1.97
UBP8YMR223W TIP20P33891 701 aa2.75□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 156.4 ms