RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	SCP1	Q08873	200 aa		4.23	□□□□□ -1.73
TFB3	YDR460W	SLF1	Q12034	447 aa	Known RBP	4.23	□□□□□ -1.73
TFB3	YDR460W	RKM5	Q12367	367 aa		4.23	□□□□□ -1.73
TFB3	YDR460W	SWM1	Q12379	170 aa		4.23	□□□□□ -1.73
TFB3	YDR460W	AHA1	Q12449	350 aa	Known RBP	4.23	□□□□□ -1.73
TFB3	YDR460W	YGL194C-A	Q2V2P6	80 aa		4.23	□□□□□ -1.73
TFB3	YDR460W	YLR149C	Q99296	730 aa		4.23	□□□□□ -1.73
TFB3	YDR460W	AAC1	P04710	309 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	SEC4	P07560	215 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
TFB3	YDR460W	YFL068W	P0CX99	160 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	YLL066W-A	P0CY00	160 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	YLL067W-A	P0CY01	160 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	MIR1	P23641	311 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	SLM5	P25345	492 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	EMP24	P32803	203 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	SOF1	P33750	489 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
TFB3	YDR460W	TVP38	P36164	337 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	MRPL28	P36527	147 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	PAC2	P39937	518 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	FLX1	P40464	311 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	MET28	P40573	187 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	PFA3	P42836	336 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	NIT2	P47016	307 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	GWT1	P47026	490 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	ZAP1	P47043	880 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	BUL1	P48524	976 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	EXG2	P52911	562 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	YGL185C	P53100	379 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	FLC3	P53121	802 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	FMP41	P53889	259 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	VPS28	Q02767	242 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	RCE1	Q03530	315 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	SDH7	Q04401	133 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	ERP1	Q05359	219 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	BER1	Q06688	274 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	MRX9	Q07349	420 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	SRO7	Q12038	1033 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	AIM45	Q12480	344 aa	Known RBP	4.22	□□□□□ -1.73
TFB3	YDR460W	TMA17	Q12513	150 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	CTF3	Q12748	733 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	YIR021W-A	Q3E739	70 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	Q0142	Q9ZZW4	58 aa		4.22	□□□□□ -1.73
TFB3	YDR460W	ADH2	P00331	348 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	RPL9A	P05738	191 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	PUT1	P09368	476 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAU19	P0CE85	124 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAU21	P0CE86	164 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAU22	P0CE87	164 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YML003W	P0CF16	290 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	DDI2	P0CH63	225 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	DDI3	P0CH64	225 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	RBK1	P25332	333 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YCR007C	P25354	239 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YCR102C	P25608	368 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAU3	P25610	124 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	MRP17	P28778	131 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	AFG1	P32317	509 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	CAT2	P32796	670 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	SFC1	P33303	322 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YOX1	P34161	385 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	SKT5	P34226	696 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PTK1	P36002	662 aa	Predicted RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	GMH1	P36125	273 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	MRPL11	P36521	249 aa	Predicted RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	DTR1	P38125	572 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	BNA4	P38169	460 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YPC1	P38298	316 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YHL044W	P38727	235 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	LRP1	P38801	184 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	RPF1	P38805	295 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	PFS1	P38872	237 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	KHA1	P40309	873 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAN6	P40459	309 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	FIS1	P40515	155 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	SYS1	P41544	203 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	GAB1	P41733	394 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	VMA21	P41806	77 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	QRI7	P43122	407 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YJR096W	P47137	282 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	ASN2	P49090	572 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	MNN10	P50108	393 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	RPL9B	P51401	191 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	RPN14	P53196	417 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YAP1802	P53309	568 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	EOS1	P53938	366 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	CYT2	Q00873	224 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	RSM23	Q01163	450 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	AVO2	Q04749	426 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	MSC3	Q05812	728 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	IPK1	Q06667	281 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	CYK3	Q07533	885 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	HBT1	Q07653	1046 aa	Known RBP	4.21	□□□□□ -1.74
TFB3	YDR460W	PAU23	Q07987	124 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YOR365C	Q08844	703 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	YCT1	Q12235	531 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	PAU17	Q12370	124 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	SLO1	Q3E784	85 aa		4.21	□□□□□ -1.74
TFB3	YDR460W	TEL1	P38110	2787 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 33.3 ms