RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YPS1P32329 569 aa0.98□□□□□ -2.25
CDC39YCR093W MSN4P33749 630 aa0.98□□□□□ -2.25
CDC39YCR093W SKG1P36169 355 aa0.98□□□□□ -2.25
CDC39YCR093W ECO1P43605 281 aa0.98□□□□□ -2.25
CDC39YCR093W YGL118CP53132 145 aa0.98□□□□□ -2.25
CDC39YCR093W YMR279CQ03263 540 aa0.98□□□□□ -2.25
CDC39YCR093W SNX41Q04053 625 aa0.98□□□□□ -2.25
CDC39YCR093W BNA7Q04066 261 aa0.98□□□□□ -2.25
CDC39YCR093W ERV41Q04651 352 aa0.98□□□□□ -2.25
CDC39YCR093W MRX4Q12467 430 aa0.98□□□□□ -2.25
CDC39YCR093W YOS9Q99220 542 aa0.98□□□□□ -2.25
CDC39YCR093W ISN1Q99312 450 aa0.98□□□□□ -2.25
CDC39YCR093W PHO80P20052 293 aa0.98□□□□□ -2.25
CDC39YCR093W YCR016WP25617 290 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W ITR1P30605 584 aa0.98□□□□□ -2.25
CDC39YCR093W COY1P34237 679 aa0.98□□□□□ -2.25
CDC39YCR093W VPS21P36017 210 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W SDS24P38314 527 aa0.98□□□□□ -2.25
CDC39YCR093W YMR144WP40214 342 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W OKP1P53298 406 aa0.98□□□□□ -2.25
CDC39YCR093W SPO19Q03029 223 aa0.98□□□□□ -2.25
CDC39YCR093W SFH1Q06168 426 aa0.98□□□□□ -2.25
CDC39YCR093W YPR147CQ06522 304 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W NCB2Q92317 146 aa0.98□□□□□ -2.25
CDC39YCR093W PMD1P32634 1753 aa0.98□□□□□ -2.25
CDC39YCR093W CUP2P15315 225 aa0.98□□□□□ -2.25
CDC39YCR093W MRPL25P23369 157 aa0.98□□□□□ -2.25
CDC39YCR093W RNA14P25298 677 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W ELO2P25358 347 aa0.98□□□□□ -2.25
CDC39YCR093W GEX1P25596 615 aa0.98□□□□□ -2.25
CDC39YCR093W MBA1P38300 278 aa0.98□□□□□ -2.25
CDC39YCR093W RRT13P40042 185 aa0.98□□□□□ -2.25
CDC39YCR093W YJR012CP47087 207 aa0.98□□□□□ -2.25
CDC39YCR093W YJR085CP47131 105 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W RHO3Q00245 231 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W MRPS16Q02608 121 aa0.98□□□□□ -2.25
CDC39YCR093W YLR173WQ06247 608 aa0.98□□□□□ -2.25
CDC39YCR093W CTS2Q06350 511 aa0.98□□□□□ -2.25
CDC39YCR093W YET3Q07451 203 aa0.98□□□□□ -2.25
CDC39YCR093W TRM10Q12400 293 aa0.98□□□□□ -2.25
CDC39YCR093W MRPL20P22354 195 aaPredicted RBP0.98□□□□□ -2.25
CDC39YCR093W FMT1P32785 401 aa0.98□□□□□ -2.25
CDC39YCR093W COT1P32798 439 aa0.98□□□□□ -2.25
CDC39YCR093W YHB1P39676 399 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W YRB1P41920 201 aaKnown RBP0.98□□□□□ -2.25
CDC39YCR093W USE1P53146 245 aa0.98□□□□□ -2.25
CDC39YCR093W INP1Q03694 420 aa0.98□□□□□ -2.25
CDC39YCR093W YJL016WP47072 561 aa0.97□□□□□ -2.25
CDC39YCR093W VPS60Q03390 229 aa0.97□□□□□ -2.25
CDC39YCR093W TDA1Q03533 586 aa0.97□□□□□ -2.25
CDC39YCR093W YDL144CQ07589 356 aa0.97□□□□□ -2.25
CDC39YCR093W APC9Q12107 265 aa0.97□□□□□ -2.25
CDC39YCR093W SRB8P25648 1427 aa0.97□□□□□ -2.25
CDC39YCR093W SGE1P33335 543 aa0.97□□□□□ -2.25
CDC39YCR093W PRY2P36110 329 aa0.97□□□□□ -2.25
CDC39YCR093W MED8P38304 223 aa0.97□□□□□ -2.25
CDC39YCR093W CUS2P53830 285 aaPredicted RBP0.97□□□□□ -2.25
CDC39YCR093W YLR446WQ06204 433 aa0.97□□□□□ -2.25
CDC39YCR093W PAM18Q07914 168 aa0.97□□□□□ -2.25
CDC39YCR093W RAD1P06777 1100 aa0.97□□□□□ -2.25
CDC39YCR093W PDC2P32896 925 aa0.97□□□□□ -2.25
CDC39YCR093W SHE1P38200 338 aa0.97□□□□□ -2.25
CDC39YCR093W RRT5P43607 289 aa0.97□□□□□ -2.25
CDC39YCR093W YJR141WP47172 347 aaPredicted RBP0.97□□□□□ -2.25
CDC39YCR093W PNC1P53184 216 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W YNR066CP53752 436 aa0.97□□□□□ -2.25
CDC39YCR093W RNY1Q02933 434 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W KAP95Q06142 861 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W DXO1Q06349 442 aa0.97□□□□□ -2.25
CDC39YCR093W SSC1P0CS90 654 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W UTR1P21373 530 aa0.97□□□□□ -2.25
CDC39YCR093W RCK1P38622 512 aa0.97□□□□□ -2.25
CDC39YCR093W TRR2P38816 342 aa0.97□□□□□ -2.25
CDC39YCR093W TEM1P38987 245 aa0.97□□□□□ -2.25
CDC39YCR093W YJR054WP47114 497 aa0.97□□□□□ -2.25
CDC39YCR093W YPL080CQ02826 108 aa0.97□□□□□ -2.25
CDC39YCR093W EMP46Q12396 444 aa0.97□□□□□ -2.25
CDC39YCR093W AIM45Q12480 344 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W AUS1Q08409 1394 aa0.97□□□□□ -2.25
CDC39YCR093W AEP1P32493 518 aa0.97□□□□□ -2.25
CDC39YCR093W YPT52P36018 234 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W SWD3P38123 315 aa0.97□□□□□ -2.25
CDC39YCR093W COS8P38723 381 aa0.97□□□□□ -2.25
CDC39YCR093W TRM5P38793 499 aa0.97□□□□□ -2.25
CDC39YCR093W NSA1P53136 463 aaPredicted RBP0.97□□□□□ -2.25
CDC39YCR093W ALG9P53868 555 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W TRM44Q02648 567 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W SEC13Q04491 297 aaKnown RBP0.97□□□□□ -2.25
CDC39YCR093W GGA1Q06336 557 aa0.97□□□□□ -2.25
CDC39YCR093W PML1Q07930 204 aaPredicted RBP0.97□□□□□ -2.25
CDC39YCR093W TDH1P00360 332 aaKnown RBP0.96□□□□□ -2.26
CDC39YCR093W RPL9AP05738 191 aaKnown RBP0.96□□□□□ -2.26
CDC39YCR093W STE18P18852 110 aa0.96□□□□□ -2.26
CDC39YCR093W PCL1P24867 279 aa0.96□□□□□ -2.26
CDC39YCR093W YHL049CP38722 271 aa0.96□□□□□ -2.26
CDC39YCR093W AIM2P39721 246 aa0.96□□□□□ -2.26
CDC39YCR093W CIN2P46670 268 aa0.96□□□□□ -2.26
CDC39YCR093W RPL9BP51401 191 aaKnown RBP0.96□□□□□ -2.26
CDC39YCR093W PLP1Q04004 230 aa0.96□□□□□ -2.26
CDC39YCR093W CDC123Q05791 360 aa0.96□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms