RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TMEM191CA6NGB0 347 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 EIF3DO15371 548 aaKnown RBP eCLIP12.77□□□□□ -0.36
PCF11-201ENST00000298281 COPS2P61201 443 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 ZNF568Q3ZCX4 644 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 ZNF667Q5HYK9 610 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 PROM2Q8N271 834 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 PPP1R36Q96LQ0 422 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 TMEM106CQ9BVX2 250 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 UNC45AQ9H3U1 944 aa12.77□□□□□ -0.36
PCF11-201ENST00000298281 TMEM2Q9UHN6 1383 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 MLNP12872 115 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 SPARCL1Q14515 664 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 TOMM20Q15388 145 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 FAM129AQ9BZQ8 928 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 NHEJ1Q9H9Q4 299 aaPredicted RBP12.77□□□□□ -0.37
PCF11-201ENST00000298281 PCDHB8Q9UN66 801 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 MYH11P35749 1972 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 A0A087WUV0 522 aaPredicted RBP12.77□□□□□ -0.37
PCF11-201ENST00000298281 KPNA7A9QM74 516 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 CEP55Q53EZ4 464 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 NSUN7Q8NE18 718 aaKnown RBP12.77□□□□□ -0.37
PCF11-201ENST00000298281 CYP26B1Q9NR63 512 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 hCG_2014768A0A024R1R8 64 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 TOGARAM2Q6ZUX3 1019 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 MSTO1Q9BUK6 570 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 FAM49AQ9H0Q0 323 aaPredicted RBP12.77□□□□□ -0.37
PCF11-201ENST00000298281 CARD9Q9H257 536 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 RASSF9O75901 435 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 NDUFA10O95299 355 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 EFHBQ8N7U6 833 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 TRIM62Q9BVG3 475 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 NDST4Q9H3R1 872 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 OLFML3Q9NRN5 406 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 MAN1B1Q9UKM7 699 aa12.77□□□□□ -0.37
PCF11-201ENST00000298281 RFX3P48380 749 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ALKBH2Q6NS38 261 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 LRRC8EQ6NSJ5 796 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 MTERF3Q96E29 417 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 SLC10A4Q96EP9 437 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 SH3GL3Q99963 347 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 CLIC2O15247 247 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 SEC24DO94855 1032 aaPredicted RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 SOAT1P35610 550 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ORC2Q13416 577 aaPredicted RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 RTKN2Q8IZC4 609 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 LINC00301Q8NCQ3 95 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ZNF555Q8NEP9 628 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 AATKQ6ZMQ8 1374 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ATP12AP54707 1039 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ALDH18A1P54886 795 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 ARL4CP56559 192 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 RCN1Q15293 331 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 TRIP13Q15645 432 aaPredicted RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 BBS9Q3SYG4 887 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 TMEM154Q6P9G4 183 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 PCDHA13Q9Y5I0 950 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 KRT75O95678 551 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 CALB1P05937 261 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 KIF23Q02241 960 aaPredicted RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 AP1B1Q10567 949 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 MAPRE1Q15691 268 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 TMEM35BQ8NCS4 154 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 SPATA16Q9BXB7 569 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 CLRN2A0PK11 232 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ERN1O75460 977 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 TADA3O75528 432 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 NR1D1P20393 614 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 PSMA2P25787 234 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 EIF4A3P38919 411 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 TWF2Q6IBS0 349 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 TMEM179Q6ZVK1 233 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 COG1Q8WTW3 980 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ZNF711Q9Y462 761 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 CFAP74Q9C0B2 1584 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 ATP1A1P05023 1023 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 EIF2S1P05198 315 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 PRAMEP78395 509 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 VEPH1Q14D04 833 aa12.76□□□□□ -0.37
PCF11-201ENST00000298281 DNAJC17Q9NVM6 304 aaKnown RBP12.76□□□□□ -0.37
PCF11-201ENST00000298281 A0A087X0T9 212 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 USP17L3A6NCW0 530 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 USP17L4A6NCW7 530 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 EIF4E1BA6NMX2 242 aaKnown RBP12.75□□□□□ -0.37
PCF11-201ENST00000298281 USP17L1Q7RTZ2 530 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 ACAP3Q96P50 834 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 SH3GL2Q99962 352 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 PCIF1Q9H4Z3 704 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 PALD1Q9ULE6 856 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 SNUPNO95149 360 aaKnown RBP12.75□□□□□ -0.37
PCF11-201ENST00000298281 HOXD10P28358 340 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 RAD51Q06609 339 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 TIGD7Q6NT04 549 aaPredicted RBP12.75□□□□□ -0.37
PCF11-201ENST00000298281 CYP21A2P08686 494 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 PLCG1P19174 1290 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 MDM2Q00987 491 aaPredicted RBP12.75□□□□□ -0.37
PCF11-201ENST00000298281 ALKBH5Q6P6C2 394 aaKnown RBP12.75□□□□□ -0.37
PCF11-201ENST00000298281 DGKHQ86XP1 1220 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 LEMD2Q8NC56 503 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 ICA1LQ8NDH6 482 aa12.75□□□□□ -0.37
PCF11-201ENST00000298281 PIGSQ96S52 555 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms