RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ABCD1P33897 745 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 CASP5P51878 434 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 L1TD1Q5T7N2 865 aaKnown RBP16.45■□□□□ 0.22
NUP54-213ENST00000513352 ISM2Q6H9L7 571 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 PSRC1Q6PGN9 363 aaPredicted RBP16.45■□□□□ 0.22
NUP54-213ENST00000513352 ELOA2Q8IYF1 753 aaPredicted RBP16.45■□□□□ 0.22
NUP54-213ENST00000513352 FIZ1Q96SL8 496 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 NTPCRQ9BSD7 190 aaKnown RBP16.45■□□□□ 0.22
NUP54-213ENST00000513352 FGFBP2Q9BYJ0 223 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 USP20Q9Y2K6 914 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 PCDHB13Q9Y5F0 798 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 MICAL3Q7RTP6 2002 aa16.45■□□□□ 0.22
NUP54-213ENST00000513352 PRPF6O94906 941 aaKnown RBP16.44■□□□□ 0.22
NUP54-213ENST00000513352 RHOBTB3O94955 611 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 MATR3P43243 847 aaKnown RBP eCLIP16.44■□□□□ 0.22
NUP54-213ENST00000513352 EPHB4P54760 987 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 PSMD2Q13200 908 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 ALCAMQ13740 583 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 IKBKEQ14164 716 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 KCNB1Q14721 858 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 NFKBIBQ15653 356 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 TCTN1Q2MV58 587 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 TWF2Q6IBS0 349 aaKnown RBP16.44■□□□□ 0.22
NUP54-213ENST00000513352 CAVIN1Q6NZI2 390 aaKnown RBP16.44■□□□□ 0.22
NUP54-213ENST00000513352 ZNF365Q70YC5 407 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 OTOP2Q7RTS6 562 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 TAS1R3Q7RTX0 852 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 ZNF720Q7Z2F6 126 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 SYCP3Q8IZU3 236 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 GLIS3Q8NEA6 775 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 PRIMPOLQ96LW4 560 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 GSDMAQ96QA5 445 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 ACCSQ96QU6 501 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 ADAM2Q99965 735 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 MRPL4Q9BYD3 311 aaKnown RBP16.44■□□□□ 0.22
NUP54-213ENST00000513352 UBE2OQ9C0C9 1292 aaKnown RBP16.44■□□□□ 0.22
NUP54-213ENST00000513352 FZD8Q9H461 694 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 AGPAT5Q9NUQ2 364 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 TBX20Q9UMR3 447 aa16.44■□□□□ 0.22
NUP54-213ENST00000513352 ACKR2O00590 384 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 ARF4P18085 180 aaPredicted RBP16.43■□□□□ 0.22
NUP54-213ENST00000513352 SCP2P22307 547 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 AXLP30530 894 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 LIG4P49917 911 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 EHHADHQ08426 723 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 PCBP1Q15365 356 aaKnown RBP eCLIP16.43■□□□□ 0.22
NUP54-213ENST00000513352 AMHR2Q16671 573 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 FAM187BQ17R55 369 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 CCDC183Q5T5S1 534 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 NOTUMQ6P988 496 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 CDR2LQ86X02 465 aaPredicted RBP16.43■□□□□ 0.22
NUP54-213ENST00000513352 NELFCDQ8IXH7 590 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 SYAP1Q96A49 352 aaPredicted RBP16.43■□□□□ 0.22
NUP54-213ENST00000513352 HVCN1Q96D96 273 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.43■□□□□ 0.22
NUP54-213ENST00000513352 TARS2Q9BW92 718 aaKnown RBP16.43■□□□□ 0.22
NUP54-213ENST00000513352 FTHL17Q9BXU8 183 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 TMX1Q9H3N1 280 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 ST6GALNAC4Q9H4F1 302 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 MAN1B1Q9UKM7 699 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 EXOC7Q9UPT5 735 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 GDAQ9Y2T3 454 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 TNRC18O15417 2968 aaPredicted RBP16.43■□□□□ 0.22
NUP54-213ENST00000513352 CNTNAP2Q9UHC6 1331 aa16.43■□□□□ 0.22
NUP54-213ENST00000513352 TTLL13PA6NNM8 815 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 HNRNPDLO14979 420 aaKnown RBP16.42■□□□□ 0.22
NUP54-213ENST00000513352 N4BP3O15049 544 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 MGEA5O60502 916 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 EDN1P05305 212 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 HARSP12081 509 aaKnown RBP16.42■□□□□ 0.22
NUP54-213ENST00000513352 KCNJ6P48051 423 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 GTF2BQ00403 316 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 STK4Q13043 487 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 TMEM240Q5SV17 173 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 NT5DC1Q5TFE4 455 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 ATF7IP2Q5U623 682 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 C16orf59Q7L2K0 433 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 MAP4K3Q8IVH8 894 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 KIAA0895Q8NCT3 520 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 VWCEQ96DN2 955 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 ADPGKQ9BRR6 497 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 TCHPQ9BT92 498 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 TRIM6Q9C030 488 aaPredicted RBP16.42■□□□□ 0.22
NUP54-213ENST00000513352 MTIF3Q9H2K0 278 aaKnown RBP16.42■□□□□ 0.22
NUP54-213ENST00000513352 KIAA1468Q9P260 1216 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 ANKFY1Q9P2R3 1169 aa16.42■□□□□ 0.22
NUP54-213ENST00000513352 ABHD14A-ACY1A0A1B0GW23 586 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 EIF3DO15371 548 aaKnown RBP eCLIP16.41■□□□□ 0.22
NUP54-213ENST00000513352 EFCAB14O75071 495 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 PPP1R37O75864 691 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 NPTXRO95502 500 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 KCNA1Q09470 495 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 KLHL40Q2TBA0 621 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 SKOR2Q2VWA4 1001 aaPredicted RBP16.41■□□□□ 0.22
NUP54-213ENST00000513352 ZNF568Q3ZCX4 644 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 ZBTB33Q86T24 672 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 SMYD4Q8IYR2 804 aaPredicted RBP16.41■□□□□ 0.22
NUP54-213ENST00000513352 MYOCDQ8IZQ8 938 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 RNF169Q8NCN4 708 aa16.41■□□□□ 0.22
NUP54-213ENST00000513352 ACO2Q99798 780 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms