RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C HXT9P40885 567 aa6.33□□□□□ -1.4
TDP1YBR223C ALK1P43633 760 aaKnown RBP6.33□□□□□ -1.4
TDP1YBR223C APS3P47064 194 aa6.33□□□□□ -1.4
TDP1YBR223C RNH70P53331 553 aa6.33□□□□□ -1.4
TDP1YBR223C MAL12P53341 584 aa6.33□□□□□ -1.4
TDP1YBR223C HPF1Q05164 967 aa6.33□□□□□ -1.4
TDP1YBR223C YLR224WQ05947 369 aa6.33□□□□□ -1.4
TDP1YBR223C SSK1Q07084 712 aa6.33□□□□□ -1.4
TDP1YBR223C FRE3Q08905 711 aa6.33□□□□□ -1.4
TDP1YBR223C RDI1Q12434 202 aa6.33□□□□□ -1.4
TDP1YBR223C PDA1P16387 420 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C FUN19P28003 413 aaPredicted RBP6.32□□□□□ -1.4
TDP1YBR223C APL3P38065 1025 aa6.32□□□□□ -1.4
TDP1YBR223C LEU5P38702 357 aa6.32□□□□□ -1.4
TDP1YBR223C PTH1P38876 190 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C FET3P38993 636 aa6.32□□□□□ -1.4
TDP1YBR223C GIP2P40036 548 aa6.32□□□□□ -1.4
TDP1YBR223C TIF34P40217 347 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C POP1P41812 875 aa6.32□□□□□ -1.4
TDP1YBR223C PMT6P42934 759 aa6.32□□□□□ -1.4
TDP1YBR223C YGL235WP53071 178 aa6.32□□□□□ -1.4
TDP1YBR223C TPC1P53257 314 aa6.32□□□□□ -1.4
TDP1YBR223C SAY1P53324 424 aa6.32□□□□□ -1.4
TDP1YBR223C YNR062CP53748 327 aa6.32□□□□□ -1.4
TDP1YBR223C EGD1Q02642 157 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C ISU1Q03020 165 aa6.32□□□□□ -1.4
TDP1YBR223C YPR109WQ06104 294 aa6.32□□□□□ -1.4
TDP1YBR223C TAZ1Q06510 381 aa6.32□□□□□ -1.4
TDP1YBR223C YPR172WQ06608 200 aa6.32□□□□□ -1.4
TDP1YBR223C IRC13Q08630 104 aa6.32□□□□□ -1.4
TDP1YBR223C FEX1Q08913 375 aa6.32□□□□□ -1.4
TDP1YBR223C GUP2Q08929 609 aa6.32□□□□□ -1.4
TDP1YBR223C ADK1P07170 222 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C DSF1P0CX08 502 aa6.32□□□□□ -1.4
TDP1YBR223C YNR073CP0CX09 502 aa6.32□□□□□ -1.4
TDP1YBR223C NHP6BP11633 99 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C CDC23P16522 626 aa6.32□□□□□ -1.4
TDP1YBR223C YCP4P25349 247 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C PRE2P30656 287 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C CDC13P32797 924 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C TIM12P32830 109 aa6.32□□□□□ -1.4
TDP1YBR223C RRP4P38792 359 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C ANS1P38832 159 aa6.32□□□□□ -1.4
TDP1YBR223C CAT5P41735 233 aa6.32□□□□□ -1.4
TDP1YBR223C LSB3P43603 459 aaKnown RBP6.32□□□□□ -1.4
TDP1YBR223C IBA57P47158 497 aa6.32□□□□□ -1.4
TDP1YBR223C GPG1P53130 126 aa6.32□□□□□ -1.4
TDP1YBR223C JAC1P53193 184 aa6.32□□□□□ -1.4
TDP1YBR223C DLT1Q04216 342 aa6.32□□□□□ -1.4
TDP1YBR223C SMA2Q04658 369 aa6.32□□□□□ -1.4
TDP1YBR223C YPR127WQ06494 345 aa6.32□□□□□ -1.4
TDP1YBR223C CYK3Q07533 885 aa6.32□□□□□ -1.4
TDP1YBR223C FMP40Q08968 688 aaPredicted RBP6.32□□□□□ -1.4
TDP1YBR223C GAL4P04386 881 aa6.31□□□□□ -1.4
TDP1YBR223C COX9P07255 59 aa6.31□□□□□ -1.4
TDP1YBR223C DBP2P24783 546 aaKnown RBP6.31□□□□□ -1.4
TDP1YBR223C HCM1P25364 564 aa6.31□□□□□ -1.4
TDP1YBR223C NAM9P27929 486 aa6.31□□□□□ -1.4
TDP1YBR223C ATS1P31386 333 aa6.31□□□□□ -1.4
TDP1YBR223C ACB1P31787 87 aa6.31□□□□□ -1.4
TDP1YBR223C SFK1P35735 353 aa6.31□□□□□ -1.4
TDP1YBR223C MRPL16P38064 232 aa6.31□□□□□ -1.4
TDP1YBR223C CHK1P38147 527 aa6.31□□□□□ -1.4
TDP1YBR223C ELO1P39540 310 aa6.31□□□□□ -1.4
TDP1YBR223C FMP52P40008 231 aa6.31□□□□□ -1.4
TDP1YBR223C BAP3P41815 604 aa6.31□□□□□ -1.4
TDP1YBR223C YJR120WP47157 116 aa6.31□□□□□ -1.4
TDP1YBR223C MTL1P53214 551 aa6.31□□□□□ -1.4
TDP1YBR223C OGG1P53397 376 aaPredicted RBP6.31□□□□□ -1.4
TDP1YBR223C SCS7Q03529 384 aa6.31□□□□□ -1.4
TDP1YBR223C AIM6Q07716 390 aa6.31□□□□□ -1.4
TDP1YBR223C RTC5Q12108 567 aaKnown RBP6.31□□□□□ -1.4
TDP1YBR223C INP53Q12271 1107 aa6.31□□□□□ -1.4
TDP1YBR223C DFG16Q99234 619 aa6.31□□□□□ -1.4
TDP1YBR223C CCH1P50077 2039 aa6.3□□□□□ -1.4
TDP1YBR223C URA3P03962 267 aa6.3□□□□□ -1.4
TDP1YBR223C GCD1P09032 578 aaPredicted RBP6.3□□□□□ -1.4
TDP1YBR223C YPK2P18961 677 aa6.3□□□□□ -1.4
TDP1YBR223C NRP1P32770 719 aaKnown RBP RIP-Chip data6.3□□□□□ -1.4not detected
TDP1YBR223C PEX32P38292 413 aa6.3□□□□□ -1.4
TDP1YBR223C PFS1P38872 237 aa6.3□□□□□ -1.4
TDP1YBR223C SKN7P38889 622 aa6.3□□□□□ -1.4
TDP1YBR223C BAT1P38891 393 aaKnown RBP6.3□□□□□ -1.4
TDP1YBR223C TIR3P40552 269 aa6.3□□□□□ -1.4
TDP1YBR223C MNN10P50108 393 aaKnown RBP6.3□□□□□ -1.4
TDP1YBR223C PRM15Q03262 622 aa6.3□□□□□ -1.4
TDP1YBR223C RSM28Q03430 361 aa6.3□□□□□ -1.4
TDP1YBR223C VBA1Q04301 562 aa6.3□□□□□ -1.4
TDP1YBR223C DCR2Q05924 578 aa6.3□□□□□ -1.4
TDP1YBR223C PEX30Q06169 523 aa6.3□□□□□ -1.4
TDP1YBR223C NMA1Q06178 401 aaKnown RBP6.3□□□□□ -1.4
TDP1YBR223C KEI1Q06346 221 aa6.3□□□□□ -1.4
TDP1YBR223C YFT2Q06676 274 aa6.3□□□□□ -1.4
TDP1YBR223C YOR365CQ08844 703 aa6.3□□□□□ -1.4
TDP1YBR223C YDR262WQ12331 272 aa6.3□□□□□ -1.4
TDP1YBR223C YGL194C-AQ2V2P6 80 aa6.3□□□□□ -1.4
TDP1YBR223C AI1P03875 834 aa6.29□□□□□ -1.4
TDP1YBR223C PRP2P20095 876 aaPredicted RBP6.29□□□□□ -1.4
TDP1YBR223C UTR1P21373 530 aa6.29□□□□□ -1.4
TDP1YBR223C MDH3P32419 343 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms