RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	BNA2	P47125	453 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	AAD10	P47182	288 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	VMA10	P48836	114 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	ARI1	P53111	347 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	ATC1	Q04005	294 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	SPC24	Q04477	213 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	YHC1	Q05900	231 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	FAR10	Q06001	478 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	COS7	Q07788	383 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	GSH2	Q08220	491 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	NSL1	Q12143	216 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	MDM32	Q12171	622 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	MED4	Q12343	284 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	PHO2	P07269	559 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	RPL20A	P0CX23	172 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	RPL20B	P0CX24	172 aa	Predicted RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	YAK1	P14680	807 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YAP1	P19880	650 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	DPB2	P24482	689 aa	Predicted RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	CSM1	P25651	190 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	NUP2	P32499	720 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YOR062C	P36025	268 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	MRPL17	P36528	281 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	THI2	P38141	450 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	OM14	P38325	134 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	ALG5	P40350	334 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	LYS12	P40495	371 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	PAC10	P48363	199 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	DIA3	P52290	468 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	PNC1	P53184	216 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	CDH1	P53197	566 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	ATG4	P53867	494 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	ATG21	Q02887	496 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	DCS1	Q06151	350 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YLL007C	Q07799	665 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YLR036C	Q07986	203 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	SNF8	Q12483	233 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	PUT2	P07275	575 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	TAL1	P15019	335 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	MCK1	P21965	375 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	GPI12	P23797	304 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	VMA3	P25515	160 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	RAD14	P28519	371 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	EMP70	P32802	667 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YKL070W	P36087	169 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	ATP3	P38077	311 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	YHR177W	P38867	453 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	PZF1	P39933	429 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YER137C	P40083	148 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	SHR5	P41912	237 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	EMC2	P47133	292 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	YGL117W	P53133	265 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	SLX9	P53251	210 aa	Predicted RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	TPC1	P53257	314 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YPL068C	Q02749	293 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	SKI8	Q02793	397 aa	Predicted RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	YDR476C	Q03362	224 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	YMR010W	Q03687	405 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	HMO1	Q03973	246 aa	Known RBP	4.07	□□□□□ -1.76
SSH4	YKL124W	YOL131W	Q08270	108 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	BSC1	Q12140	328 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	RPN6	Q12377	434 aa		4.07	□□□□□ -1.76
SSH4	YKL124W	GLT1	Q12680	2145 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	VPS63	O13549	108 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	ATP6	P00854	259 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	TPK2	P06245	380 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	SSA3	P09435	649 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	RPL35A	P0CX84	120 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	RPL35B	P0CX85	120 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	CBS1	P14066	229 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	KGD1	P20967	1014 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	YCR061W	P25639	631 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	YKL107W	P34251	309 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
SSH4	YKL124W	FAA2	P39518	744 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	THO1	P40040	218 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	RGI1	P40043	161 aa	Predicted RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	ECO1	P43605	281 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	BIT61	P47041	543 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	EFM3	P47163	339 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	PFA5	Q03289	374 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	CGI121	Q03705	181 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	TY1A-MR1	Q04215	440 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	PLM2	Q04383	521 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	DCR2	Q05924	578 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	YLR446W	Q06204	433 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	ACF2	Q12168	779 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	PRP46	Q12417	451 aa	Predicted RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	PSF1	Q12488	208 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	LSO2	Q3E772	92 aa	Known RBP	4.06	□□□□□ -1.76
SSH4	YKL124W	YBR126W-A	Q8TGU7	68 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	TAD3	Q9URQ3	322 aa		4.06	□□□□□ -1.76
SSH4	YKL124W	BAR1	P12630	587 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	CCA1	P21269	546 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	ERG8	P24521	451 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	CTR86	P25355	563 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	AFG1	P32317	509 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	VPH2	P32341	215 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	ROT2	P38138	954 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 56 ms