RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	FIG4	P42837	879 aa		4.77	□□□□□ -1.65
LCB4	YOR171C	KXD1	P53158	218 aa		4.77	□□□□□ -1.65
LCB4	YOR171C	SAS4	Q04003	481 aa		4.77	□□□□□ -1.65
LCB4	YOR171C	GYP1	Q08484	637 aa		4.77	□□□□□ -1.65
LCB4	YOR171C	MOD5	P07884	428 aa		4.76	□□□□□ -1.65
LCB4	YOR171C	RDS2	P19541	446 aa	Known RBP	4.76	□□□□□ -1.65
LCB4	YOR171C	SDH2	P21801	266 aa		4.76	□□□□□ -1.65
LCB4	YOR171C	TPD3	P31383	635 aa		4.76	□□□□□ -1.65
LCB4	YOR171C	ISF1	P32488	338 aa		4.76	□□□□□ -1.65
LCB4	YOR171C	YPR084W	Q06821	456 aa		4.76	□□□□□ -1.65
LCB4	YOR171C	SSA4	P22202	642 aa	Known RBP	4.75	□□□□□ -1.65
LCB4	YOR171C	RRD1	P40454	393 aa	Known RBP	4.75	□□□□□ -1.65
LCB4	YOR171C	HXT10	P43581	546 aa		4.75	□□□□□ -1.65
LCB4	YOR171C	YPP1	P46951	817 aa		4.75	□□□□□ -1.65
LCB4	YOR171C	TEC1	P18412	486 aa		4.75	□□□□□ -1.65
LCB4	YOR171C	BRE2	P43132	505 aa		4.75	□□□□□ -1.65
LCB4	YOR171C	NOB1	Q08444	459 aa	Known RBP	4.74	□□□□□ -1.65
LCB4	YOR171C	EMP47	P43555	445 aa		4.73	□□□□□ -1.65
LCB4	YOR171C	FRA1	Q07825	749 aa		4.73	□□□□□ -1.65
LCB4	YOR171C	PEP12	P32854	288 aa		4.73	□□□□□ -1.65
LCB4	YOR171C	SIS2	P36024	562 aa		4.73	□□□□□ -1.65
LCB4	YOR171C	ITT1	Q04638	464 aa		4.73	□□□□□ -1.65
LCB4	YOR171C	SSA1	P10591	642 aa	Known RBP	4.72	□□□□□ -1.65
LCB4	YOR171C	VAC17	P25591	423 aa		4.72	□□□□□ -1.65
LCB4	YOR171C	GUT2	P32191	649 aa		4.72	□□□□□ -1.65
LCB4	YOR171C	GCR2	Q01722	534 aa		4.72	□□□□□ -1.65
LCB4	YOR171C	YML083C	Q04526	418 aa		4.72	□□□□□ -1.65
LCB4	YOR171C	PUP1	P25043	261 aa		4.71	□□□□□ -1.66
LCB4	YOR171C	NAP1	P25293	417 aa	Known RBP	4.71	□□□□□ -1.66
LCB4	YOR171C	MTC5	Q03897	1148 aa		4.71	□□□□□ -1.66
LCB4	YOR171C	APL6	P46682	809 aa		4.71	□□□□□ -1.66
LCB4	YOR171C	STE20	Q03497	939 aa	Known RBP	4.71	□□□□□ -1.66
LCB4	YOR171C	MRF1	P30775	413 aa	Predicted RBP	4.7	□□□□□ -1.66
LCB4	YOR171C	MRX12	P47084	519 aa		4.7	□□□□□ -1.66
LCB4	YOR171C	TGL4	P36165	910 aa		4.69	□□□□□ -1.66
LCB4	YOR171C	GEF1	P37020	779 aa		4.69	□□□□□ -1.66
LCB4	YOR171C	CST6	P40535	587 aa		4.69	□□□□□ -1.66
LCB4	YOR171C	BDP1	P46678	594 aa		4.69	□□□□□ -1.66
LCB4	YOR171C	KTR7	P40504	517 aa		4.68	□□□□□ -1.66
LCB4	YOR171C	IOC4	Q04213	475 aa		4.68	□□□□□ -1.66
LCB4	YOR171C	PUS5	Q06244	254 aa		4.68	□□□□□ -1.66
LCB4	YOR171C	AIM44	Q99299	758 aa		4.68	□□□□□ -1.66
LCB4	YOR171C	ENV9	Q08651	330 aa		4.67	□□□□□ -1.66
LCB4	YOR171C	FRK1	Q03002	865 aa	Predicted RBP	4.66	□□□□□ -1.66
LCB4	YOR171C	IXR1	P33417	597 aa		4.66	□□□□□ -1.66
LCB4	YOR171C	SOH1	P38633	127 aa		4.66	□□□□□ -1.66
LCB4	YOR171C	ATG3	P40344	310 aa		4.66	□□□□□ -1.66
LCB4	YOR171C	ECM23	Q02710	187 aa		4.65	□□□□□ -1.66
LCB4	YOR171C	UTP13	Q05946	817 aa	Known RBP	4.65	□□□□□ -1.66
LCB4	YOR171C	YEL077C	Q3E7X8	1277 aa		4.65	□□□□□ -1.66
LCB4	YOR171C	KIP2	P28743	706 aa		4.64	□□□□□ -1.67
LCB4	YOR171C	HAL5	P38970	855 aa	Known RBP	4.64	□□□□□ -1.67
LCB4	YOR171C	GAL2	P13181	574 aa		4.64	□□□□□ -1.67
LCB4	YOR171C	SYH1	Q02875	849 aa	Known RBP	4.63	□□□□□ -1.67
LCB4	YOR171C	EMW1	P42842	904 aa	Known RBP	4.62	□□□□□ -1.67
LCB4	YOR171C	ISR1	Q06098	443 aa	Known RBP	4.62	□□□□□ -1.67
LCB4	YOR171C	APP1	P53933	587 aa		4.62	□□□□□ -1.67
LCB4	YOR171C	RPL34A	P87262	121 aa	Predicted RBP	4.62	□□□□□ -1.67
LCB4	YOR171C	ATG20	Q07528	640 aa		4.62	□□□□□ -1.67
LCB4	YOR171C	PHO87	P25360	923 aa		4.61	□□□□□ -1.67
LCB4	YOR171C	SLX8	P40072	274 aa		4.61	□□□□□ -1.67
LCB4	YOR171C	UBX7	P38349	436 aa		4.6	□□□□□ -1.67
LCB4	YOR171C	CLA4	P48562	842 aa		4.6	□□□□□ -1.67
LCB4	YOR171C	ACS2	P52910	683 aa	Known RBP	4.6	□□□□□ -1.67
LCB4	YOR171C	YML020W	Q03722	664 aa		4.6	□□□□□ -1.67
LCB4	YOR171C	MRT4	P33201	236 aa	Known RBP	4.6	□□□□□ -1.67
LCB4	YOR171C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
LCB4	YOR171C	MIP1	P15801	1254 aa		4.59	□□□□□ -1.67
LCB4	YOR171C	CDC3	P32457	520 aa	Known RBP	4.59	□□□□□ -1.67
LCB4	YOR171C	TPS3	P38426	1054 aa	Known RBP	4.59	□□□□□ -1.67
LCB4	YOR171C	ROM1	P53046	1155 aa		4.59	□□□□□ -1.67
LCB4	YOR171C	HED1	Q03937	162 aa		4.59	□□□□□ -1.67
LCB4	YOR171C	HAP4	P14064	554 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	PDI1	P17967	522 aa	Known RBP	4.58	□□□□□ -1.68
LCB4	YOR171C	HDA3	Q06623	655 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	NOP8	Q08287	484 aa	Predicted RBP	4.58	□□□□□ -1.68
LCB4	YOR171C	TSC13	Q99190	310 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	FBP26	P32604	452 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	MKS1	P34072	584 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	GAS4	Q08271	471 aa		4.58	□□□□□ -1.68
LCB4	YOR171C	YBL086C	P38177	466 aa		4.57	□□□□□ -1.68
LCB4	YOR171C	AIM9	P40053	627 aa	Known RBP	4.57	□□□□□ -1.68
LCB4	YOR171C	ISU1	Q03020	165 aa		4.57	□□□□□ -1.68
LCB4	YOR171C	SPT2	P06843	333 aa	Predicted RBP	4.56	□□□□□ -1.68
LCB4	YOR171C	MET32	Q12041	191 aa		4.56	□□□□□ -1.68
LCB4	YOR171C	CWC15	Q03772	175 aa	Known RBP	4.56	□□□□□ -1.68
LCB4	YOR171C	DFG5	Q05031	458 aa		4.56	□□□□□ -1.68
LCB4	YOR171C	UTR2	P32623	467 aa		4.55	□□□□□ -1.68
LCB4	YOR171C	YFL034W	P43564	1073 aa		4.55	□□□□□ -1.68
LCB4	YOR171C	HAT1	Q12341	374 aa		4.55	□□□□□ -1.68
LCB4	YOR171C	STE6	P12866	1290 aa		4.54	□□□□□ -1.68
LCB4	YOR171C	MET22	P32179	357 aa		4.54	□□□□□ -1.68
LCB4	YOR171C	AIR1	P40507	360 aa	Known RBP	4.54	□□□□□ -1.68
LCB4	YOR171C	SWI5	P08153	709 aa		4.54	□□□□□ -1.68
LCB4	YOR171C	NTH2	P35172	780 aa		4.54	□□□□□ -1.68
LCB4	YOR171C	SSF1	P38789	453 aa	Predicted RBP	4.54	□□□□□ -1.68
LCB4	YOR171C	PUF6	Q04373	656 aa	Known RBP	4.54	□□□□□ -1.68
LCB4	YOR171C	RPS6A	P0CX37	236 aa	Known RBP	4.53	□□□□□ -1.68
LCB4	YOR171C	RPS6B	P0CX38	236 aa	Predicted RBP	4.53	□□□□□ -1.68
LCB4	YOR171C	UBP1	P25037	809 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 56.1 ms