RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C AGE1Q04412 482 aa3.61□□□□□ -1.83
VPS35YJL154C PDC1P06169 563 aaKnown RBP3.6□□□□□ -1.83
VPS35YJL154C MRX12P47084 519 aa3.6□□□□□ -1.83
VPS35YJL154C YPR015CQ12531 247 aa3.6□□□□□ -1.83
VPS35YJL154C HXT10P43581 546 aa3.6□□□□□ -1.83
VPS35YJL154C KIP2P28743 706 aa3.59□□□□□ -1.83
VPS35YJL154C MRX10Q05648 414 aa3.58□□□□□ -1.84
VPS35YJL154C FIG4P42837 879 aa3.58□□□□□ -1.84
VPS35YJL154C TGL4P36165 910 aa3.57□□□□□ -1.84
VPS35YJL154C VRP1P37370 817 aa3.57□□□□□ -1.84
VPS35YJL154C RRD1P40454 393 aaKnown RBP3.57□□□□□ -1.84
VPS35YJL154C ECM23Q02710 187 aa3.57□□□□□ -1.84
VPS35YJL154C IXR1P33417 597 aa3.57□□□□□ -1.84
VPS35YJL154C SLX8P40072 274 aa3.57□□□□□ -1.84
VPS35YJL154C FRA1Q07825 749 aa3.57□□□□□ -1.84
VPS35YJL154C YEL077CQ3E7X8 1277 aa3.57□□□□□ -1.84
VPS35YJL154C SOH1P38633 127 aa3.56□□□□□ -1.84
VPS35YJL154C CDC3P32457 520 aaKnown RBP3.56□□□□□ -1.84
VPS35YJL154C FRK1Q03002 865 aaPredicted RBP3.56□□□□□ -1.84
VPS35YJL154C PUP1P25043 261 aa3.55□□□□□ -1.84
VPS35YJL154C UBX7P38349 436 aa3.55□□□□□ -1.84
VPS35YJL154C NOB1Q08444 459 aaKnown RBP3.55□□□□□ -1.84
VPS35YJL154C VAC17P25591 423 aa3.54□□□□□ -1.84
VPS35YJL154C TPD3P31383 635 aa3.54□□□□□ -1.84
VPS35YJL154C SYH1Q02875 849 aaKnown RBP3.54□□□□□ -1.84
VPS35YJL154C YML083CQ04526 418 aa3.54□□□□□ -1.84
VPS35YJL154C GAL2P13181 574 aa3.54□□□□□ -1.84
VPS35YJL154C BCK2P33306 851 aa3.54□□□□□ -1.84
VPS35YJL154C SLD2P34252 453 aa3.54□□□□□ -1.84
VPS35YJL154C YML020WQ03722 664 aa3.54□□□□□ -1.84
VPS35YJL154C YFL034WP43564 1073 aa3.53□□□□□ -1.84
VPS35YJL154C UTP13Q05946 817 aaKnown RBP3.53□□□□□ -1.84
VPS35YJL154C HAP4P14064 554 aa3.53□□□□□ -1.84
VPS35YJL154C PEP12P32854 288 aa3.53□□□□□ -1.84
VPS35YJL154C PUS5Q06244 254 aa3.53□□□□□ -1.84
VPS35YJL154C RPP2BP02400 110 aaKnown RBP3.52□□□□□ -1.85
VPS35YJL154C RDS2P19541 446 aaKnown RBP3.52□□□□□ -1.85
VPS35YJL154C BDP1P46678 594 aa3.52□□□□□ -1.85
VPS35YJL154C ISR1Q06098 443 aaKnown RBP3.52□□□□□ -1.85
VPS35YJL154C ATG20Q07528 640 aa3.52□□□□□ -1.85
VPS35YJL154C PHO87P25360 923 aa3.52□□□□□ -1.85
VPS35YJL154C MIP1P15801 1254 aa3.52□□□□□ -1.85
VPS35YJL154C YPR084WQ06821 456 aa3.52□□□□□ -1.85
VPS35YJL154C MOD5P07884 428 aa3.51□□□□□ -1.85
VPS35YJL154C PDI1P17967 522 aaKnown RBP3.51□□□□□ -1.85
VPS35YJL154C TBS1P38114 1094 aa3.51□□□□□ -1.85
VPS35YJL154C APP1P53933 587 aa3.51□□□□□ -1.85
VPS35YJL154C DAT1P13483 248 aaKnown RBP3.5□□□□□ -1.85
VPS35YJL154C VAN1P23642 535 aa3.5□□□□□ -1.85
VPS35YJL154C MKS1P34072 584 aa3.5□□□□□ -1.85
VPS35YJL154C ITT1Q04638 464 aa3.5□□□□□ -1.85
VPS35YJL154C GAS4Q08271 471 aa3.5□□□□□ -1.85
VPS35YJL154C HAT1Q12341 374 aa3.5□□□□□ -1.85
VPS35YJL154C TSC13Q99190 310 aa3.5□□□□□ -1.85
VPS35YJL154C UTR2P32623 467 aa3.49□□□□□ -1.85
VPS35YJL154C AIM9P40053 627 aaKnown RBP3.49□□□□□ -1.85
VPS35YJL154C CWH41P53008 833 aa3.49□□□□□ -1.85
VPS35YJL154C CBC2Q08920 208 aaKnown RBP RIP-Chip data3.49□□□□□ -1.85not detected
VPS35YJL154C TRS33Q99394 268 aa3.49□□□□□ -1.85
VPS35YJL154C CST6P40535 587 aa3.48□□□□□ -1.85
VPS35YJL154C ACS2P52910 683 aaKnown RBP3.48□□□□□ -1.85
VPS35YJL154C PUF6Q04373 656 aaKnown RBP3.48□□□□□ -1.85
VPS35YJL154C KAR5Q04746 504 aa3.48□□□□□ -1.85
VPS35YJL154C PUN1Q06991 263 aa3.48□□□□□ -1.85
VPS35YJL154C XDJ1P39102 459 aa3.48□□□□□ -1.85
VPS35YJL154C HDA3Q06623 655 aa3.48□□□□□ -1.85
VPS35YJL154C APL6P46682 809 aa3.48□□□□□ -1.85
VPS35YJL154C DLD3P39976 496 aaKnown RBP3.47□□□□□ -1.85
VPS35YJL154C EMW1P42842 904 aaKnown RBP3.47□□□□□ -1.85
VPS35YJL154C BDS1Q08347 646 aa3.47□□□□□ -1.85
VPS35YJL154C AMS1P22855 1083 aa3.47□□□□□ -1.85
VPS35YJL154C NTH2P35172 780 aa3.47□□□□□ -1.85
VPS35YJL154C FBP26P32604 452 aa3.46□□□□□ -1.86
VPS35YJL154C HAL5P38970 855 aaKnown RBP3.46□□□□□ -1.86
VPS35YJL154C HED1Q03937 162 aa3.46□□□□□ -1.86
VPS35YJL154C DFG5Q05031 458 aa3.46□□□□□ -1.86
VPS35YJL154C FUR4P05316 633 aaKnown RBP3.46□□□□□ -1.86
VPS35YJL154C CYT1P07143 309 aa3.46□□□□□ -1.86
VPS35YJL154C RPS6AP0CX37 236 aaKnown RBP3.46□□□□□ -1.86
VPS35YJL154C RPS6BP0CX38 236 aaPredicted RBP3.46□□□□□ -1.86
VPS35YJL154C SSF1P38789 453 aaPredicted RBP3.46□□□□□ -1.86
VPS35YJL154C ISU1Q03020 165 aa3.46□□□□□ -1.86
VPS35YJL154C UGA3P26370 528 aa3.45□□□□□ -1.86
VPS35YJL154C ROM1P53046 1155 aa3.45□□□□□ -1.86
VPS35YJL154C HST3P53687 447 aa3.45□□□□□ -1.86
VPS35YJL154C SRS2P12954 1174 aa3.45□□□□□ -1.86
VPS35YJL154C SDH2P21801 266 aa3.45□□□□□ -1.86
VPS35YJL154C RRN6P32786 894 aa3.45□□□□□ -1.86
VPS35YJL154C PNP1Q05788 311 aa3.45□□□□□ -1.86
VPS35YJL154C NOP8Q08287 484 aaPredicted RBP3.45□□□□□ -1.86
VPS35YJL154C YBL113CQ7M4S9 792 aa3.45□□□□□ -1.86
VPS35YJL154C STM1P39015 273 aaKnown RBP3.44□□□□□ -1.86
VPS35YJL154C MON2P48563 1636 aaPredicted RBP3.44□□□□□ -1.86
VPS35YJL154C SRF1Q12516 437 aa3.44□□□□□ -1.86
VPS35YJL154C GRS1P38088 690 aaKnown RBP3.43□□□□□ -1.86
VPS35YJL154C SPT2P06843 333 aaPredicted RBP3.43□□□□□ -1.86
VPS35YJL154C SWI5P08153 709 aa3.43□□□□□ -1.86
VPS35YJL154C MRT4P33201 236 aaKnown RBP3.43□□□□□ -1.86
VPS35YJL154C RTT106P40161 455 aa3.43□□□□□ -1.86
VPS35YJL154C WTM2Q12206 467 aa3.43□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms