RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIM1	YIL123W	YFR016C	P43597	1233 aa	Known RBP	13.98	□□□□□ -0.17
SIM1	YIL123W	SRT1	Q03175	343 aa		13.94	□□□□□ -0.18
SIM1	YIL123W	YAH1	Q12184	172 aa	Known RBP	13.94	□□□□□ -0.18
SIM1	YIL123W	UGA3	P26370	528 aa		13.93	□□□□□ -0.18
SIM1	YIL123W	INP54	Q08227	384 aa	Known RBP	13.93	□□□□□ -0.18
SIM1	YIL123W	BMS1	Q08965	1183 aa	Known RBP	13.93	□□□□□ -0.18
SIM1	YIL123W	POL32	P47110	350 aa		13.92	□□□□□ -0.18
SIM1	YIL123W	ENV9	Q08651	330 aa		13.92	□□□□□ -0.18
SIM1	YIL123W	NSE3	Q05541	303 aa		13.91	□□□□□ -0.18
SIM1	YIL123W	NUP145	P49687	1317 aa		13.9	□□□□□ -0.18
SIM1	YIL123W	KCC4	P25389	1037 aa		13.9	□□□□□ -0.18
SIM1	YIL123W	IES2	P40154	320 aa		13.9	□□□□□ -0.18
SIM1	YIL123W	COQ4	O13525	335 aa		13.9	□□□□□ -0.19
SIM1	YIL123W	LYS2	P07702	1392 aa		13.89	□□□□□ -0.19
SIM1	YIL123W	APP1	P53933	587 aa		13.89	□□□□□ -0.19
SIM1	YIL123W	MEC3	Q02574	474 aa		13.89	□□□□□ -0.19
SIM1	YIL123W	RPC31	P17890	251 aa		13.88	□□□□□ -0.19
SIM1	YIL123W	YBR287W	P38355	427 aa		13.88	□□□□□ -0.19
SIM1	YIL123W	PUF6	Q04373	656 aa	Known RBP	13.86	□□□□□ -0.19
SIM1	YIL123W	YPP1	P46951	817 aa		13.85	□□□□□ -0.19
SIM1	YIL123W	ADE16	P54113	591 aa	Known RBP	13.85	□□□□□ -0.19
SIM1	YIL123W	TRP5	P00931	707 aa	Known RBP	13.84	□□□□□ -0.19
SIM1	YIL123W	YKL133C	P36066	463 aa		13.83	□□□□□ -0.2
SIM1	YIL123W	YOL057W	Q08225	711 aa		13.83	□□□□□ -0.2
SIM1	YIL123W	YRF1-3	P0CX14	1859 aa		13.83	□□□□□ -0.2
SIM1	YIL123W	YRF1-7	P0CX15	1859 aa		13.83	□□□□□ -0.2
SIM1	YIL123W	YRF1-6	P53819	1859 aa		13.83	□□□□□ -0.2
SIM1	YIL123W	OSM1	P21375	501 aa	Known RBP	13.82	□□□□□ -0.2
SIM1	YIL123W	CSI1	Q04368	295 aa		13.81	□□□□□ -0.2
SIM1	YIL123W	IMH1	Q06704	911 aa	Known RBP	13.81	□□□□□ -0.2
SIM1	YIL123W	RPS19A	P07280	144 aa	Known RBP	13.8	□□□□□ -0.2
SIM1	YIL123W	RPS19B	P07281	144 aa	Predicted RBP	13.8	□□□□□ -0.2
SIM1	YIL123W	ROM2	P51862	1356 aa	Known RBP	13.79	□□□□□ -0.2
SIM1	YIL123W	RAD4	P14736	754 aa		13.79	□□□□□ -0.2
SIM1	YIL123W	FRK1	Q03002	865 aa	Predicted RBP	13.77	□□□□□ -0.21
SIM1	YIL123W	ALE1	Q08548	619 aa		13.77	□□□□□ -0.21
SIM1	YIL123W	ATG13	Q06628	738 aa		13.76	□□□□□ -0.21
SIM1	YIL123W	YNG2	P38806	282 aa	Known RBP	13.75	□□□□□ -0.21
SIM1	YIL123W	YDR306C	Q06640	478 aa		13.75	□□□□□ -0.21
SIM1	YIL123W	MRP7	P12687	371 aa		13.73	□□□□□ -0.21
SIM1	YIL123W	YBP2	P53169	641 aa		13.73	□□□□□ -0.21
SIM1	YIL123W	ILV3	P39522	585 aa	Known RBP	13.73	□□□□□ -0.21
SIM1	YIL123W	NOP8	Q08287	484 aa	Predicted RBP	13.73	□□□□□ -0.21
SIM1	YIL123W	RAD24	P32641	659 aa		13.72	□□□□□ -0.21
SIM1	YIL123W	SPO1	P53541	631 aa		13.72	□□□□□ -0.21
SIM1	YIL123W	RMT2	Q03305	412 aa		13.72	□□□□□ -0.21
SIM1	YIL123W	DNM1	P54861	757 aa		13.71	□□□□□ -0.22
SIM1	YIL123W	DOT5	P40553	215 aa		13.7	□□□□□ -0.22
SIM1	YIL123W	YGR122W	P53272	402 aa		13.7	□□□□□ -0.22
SIM1	YIL123W	ECM16	Q04217	1267 aa	Known RBP	13.7	□□□□□ -0.22
SIM1	YIL123W	ZDS2	P54786	942 aa		13.69	□□□□□ -0.22
SIM1	YIL123W	COB	P00163	385 aa		13.68	□□□□□ -0.22
SIM1	YIL123W	CST6	P40535	587 aa		13.68	□□□□□ -0.22
SIM1	YIL123W	YIR014W	P40570	242 aa		13.68	□□□□□ -0.22
SIM1	YIL123W	FOX2	Q02207	900 aa	Known RBP	13.68	□□□□□ -0.22
SIM1	YIL123W	BOI2	P39969	1040 aa		13.67	□□□□□ -0.22
SIM1	YIL123W	YJR008W	P47085	338 aa		13.67	□□□□□ -0.22
SIM1	YIL123W	GCD7	P32502	381 aa	Predicted RBP	13.66	□□□□□ -0.22
SIM1	YIL123W	NOP53	Q12080	455 aa	Known RBP	13.66	□□□□□ -0.22
SIM1	YIL123W	HGH1	P48362	394 aa	Known RBP	13.65	□□□□□ -0.22
SIM1	YIL123W	YKR075C	P36155	307 aa		13.64	□□□□□ -0.23
SIM1	YIL123W	YIL055C	P40523	627 aa	Known RBP	13.64	□□□□□ -0.23
SIM1	YIL123W	SSP2	Q08646	371 aa		13.64	□□□□□ -0.23
SIM1	YIL123W	SWI1	P09547	1314 aa		13.64	□□□□□ -0.23
SIM1	YIL123W	GRX1	P25373	110 aa	Known RBP	13.64	□□□□□ -0.23
SIM1	YIL123W	SWC3	P31376	625 aa		13.64	□□□□□ -0.23
SIM1	YIL123W	NUP133	P36161	1157 aa		13.64	□□□□□ -0.23
SIM1	YIL123W	TUM1	Q08686	304 aa	Known RBP	13.64	□□□□□ -0.23
SIM1	YIL123W	NMD2	P38798	1089 aa	Known RBP	13.63	□□□□□ -0.23
SIM1	YIL123W	OPY1	P38271	328 aa		13.61	□□□□□ -0.23
SIM1	YIL123W	MDG1	P53885	366 aa		13.6	□□□□□ -0.23
SIM1	YIL123W	NKP2	Q06162	153 aa		13.6	□□□□□ -0.23
SIM1	YIL123W	LAM6	Q08001	693 aa		13.59	□□□□□ -0.23
SIM1	YIL123W	PHM7	Q12252	991 aa		13.59	□□□□□ -0.23
SIM1	YIL123W	RFC1	P38630	861 aa	Known RBP	13.58	□□□□□ -0.24
SIM1	YIL123W	VPS64	Q03944	604 aa		13.58	□□□□□ -0.24
SIM1	YIL123W	YPR204W	Q08995	1032 aa		13.58	□□□□□ -0.24
SIM1	YIL123W	RAD50	P12753	1312 aa		13.58	□□□□□ -0.24
SIM1	YIL123W	SET1	P38827	1080 aa	Known RBP	13.57	□□□□□ -0.24
SIM1	YIL123W	YLR271W	Q06152	274 aa		13.57	□□□□□ -0.24
SIM1	YIL123W	UBP12	P39538	1254 aa		13.56	□□□□□ -0.24
SIM1	YIL123W	LPD1	P09624	499 aa	Known RBP	13.56	□□□□□ -0.24
SIM1	YIL123W	CDC16	P09798	840 aa		13.56	□□□□□ -0.24
SIM1	YIL123W	APL2	P36000	726 aa	Predicted RBP	13.56	□□□□□ -0.24
SIM1	YIL123W	ARG8	P18544	423 aa		13.55	□□□□□ -0.24
SIM1	YIL123W	IME2	P32581	645 aa		13.54	□□□□□ -0.24
SIM1	YIL123W	PRP40	P33203	583 aa	Known RBP	13.53	□□□□□ -0.24
SIM1	YIL123W	RIM15	P43565	1770 aa		13.52	□□□□□ -0.24
SIM1	YIL123W	RPN11	P43588	306 aa	Known RBP	13.52	□□□□□ -0.25
SIM1	YIL123W	MSB4	Q12317	492 aa		13.52	□□□□□ -0.25
SIM1	YIL123W	DCD1	P06773	312 aa		13.51	□□□□□ -0.25
SIM1	YIL123W	SSF1	P38789	453 aa	Predicted RBP	13.51	□□□□□ -0.25
SIM1	YIL123W	YJL181W	P46987	611 aa		13.49	□□□□□ -0.25
SIM1	YIL123W	TEA1	P47988	759 aa		13.49	□□□□□ -0.25
SIM1	YIL123W	NCB2	Q92317	146 aa		13.49	□□□□□ -0.25
SIM1	YIL123W	BDP1	P46678	594 aa		13.48	□□□□□ -0.25
SIM1	YIL123W	GCR2	Q01722	534 aa		13.48	□□□□□ -0.25
SIM1	YIL123W	PKH1	Q03407	766 aa		13.48	□□□□□ -0.25
SIM1	YIL123W	ITC1	P53125	1264 aa		13.47	□□□□□ -0.25
SIM1	YIL123W	YMR074C	Q04773	145 aa		13.47	□□□□□ -0.25

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms