RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 RCAN3Q9UKA8 241 aa14.31□□□□□ -0.12
CLIP1-219ENST00000620786 TRIM6-TRIM34B2RNG4 842 aa14.31□□□□□ -0.12
CLIP1-219ENST00000620786 HMMRO75330 724 aa14.31□□□□□ -0.12
CLIP1-219ENST00000620786 HSP90B1P14625 803 aaKnown RBP14.3□□□□□ -0.12
CLIP1-219ENST00000620786 DRC7Q8IY82 874 aa14.29□□□□□ -0.12
CLIP1-219ENST00000620786 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.28□□□□□ -0.12
CLIP1-219ENST00000620786 MINK1Q8N4C8 1332 aaPredicted RBP14.28□□□□□ -0.12
CLIP1-219ENST00000620786 NOP58Q9Y2X3 529 aaKnown RBP14.28□□□□□ -0.12
CLIP1-219ENST00000620786 EVC2Q86UK5 1308 aa14.28□□□□□ -0.12
CLIP1-219ENST00000620786 PMFBP1Q8TBY8 1022 aa14.27□□□□□ -0.13
CLIP1-219ENST00000620786 PSME1Q06323 249 aa14.26□□□□□ -0.13
CLIP1-219ENST00000620786 TOMM22Q9NS69 142 aa14.26□□□□□ -0.13
CLIP1-219ENST00000620786 TTC5Q8N0Z6 440 aa14.25□□□□□ -0.13
CLIP1-219ENST00000620786 GAPVD1Q14C86 1478 aa14.25□□□□□ -0.13
CLIP1-219ENST00000620786 SYTL4Q96C24 671 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-219ENST00000620786 CLUAP1Q96AJ1 413 aa14.24□□□□□ -0.13
CLIP1-219ENST00000620786 CENPJQ9HC77 1338 aaPredicted RBP14.24□□□□□ -0.13
CLIP1-219ENST00000620786 RRP7AQ9Y3A4 280 aaKnown RBP14.24□□□□□ -0.13
CLIP1-219ENST00000620786 CGNL1Q0VF96 1302 aa14.23□□□□□ -0.13
CLIP1-219ENST00000620786 HTATSF1O43719 755 aaKnown RBP14.23□□□□□ -0.13
CLIP1-219ENST00000620786 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLIP1-219ENST00000620786 KIAA2012Q0VF49 1180 aa14.23□□□□□ -0.13
CLIP1-219ENST00000620786 TEFQ10587 303 aa14.23□□□□□ -0.13
CLIP1-219ENST00000620786 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 ATF3P18847 181 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 NGEFQ8N5V2 710 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 VPS53Q5VIR6 699 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 PANK3Q9H999 370 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 NLRP13Q86W25 1043 aa14.22□□□□□ -0.13
CLIP1-219ENST00000620786 PHF23Q9BUL5 403 aaPredicted RBP14.22□□□□□ -0.13
CLIP1-219ENST00000620786 KIF15Q9NS87 1388 aa14.21□□□□□ -0.13
CLIP1-219ENST00000620786 RASSF8Q8NHQ8 419 aa14.21□□□□□ -0.13
CLIP1-219ENST00000620786 FGD5Q6ZNL6 1462 aa14.21□□□□□ -0.14
CLIP1-219ENST00000620786 MFAP1P55081 439 aaKnown RBP14.2□□□□□ -0.14
CLIP1-219ENST00000620786 ST20-MTHFSA0A0A6YYL1 179 aa14.2□□□□□ -0.14
CLIP1-219ENST00000620786 CHAF1AQ13111 956 aaPredicted RBP14.2□□□□□ -0.14
CLIP1-219ENST00000620786 PHLDB1Q86UU1 1377 aa14.2□□□□□ -0.14
CLIP1-219ENST00000620786 KLHL34Q8N239 644 aa14.19□□□□□ -0.14
CLIP1-219ENST00000620786 RAD54L2Q9Y4B4 1467 aa14.19□□□□□ -0.14
CLIP1-219ENST00000620786 NAP1L5Q96NT1 182 aaPredicted RBP14.19□□□□□ -0.14
CLIP1-219ENST00000620786 L1TD1Q5T7N2 865 aaKnown RBP14.19□□□□□ -0.14
CLIP1-219ENST00000620786 ERICH6BQ5W0A0 696 aa14.18□□□□□ -0.14
CLIP1-219ENST00000620786 ELL2O00472 640 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-219ENST00000620786 MARCH6O60337 910 aa14.18□□□□□ -0.14
CLIP1-219ENST00000620786 AMER1Q5JTC6 1135 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-219ENST00000620786 NOL8Q76FK4 1167 aaKnown RBP14.18□□□□□ -0.14
CLIP1-219ENST00000620786 EIF2S2P20042 333 aaKnown RBP14.17□□□□□ -0.14
CLIP1-219ENST00000620786 TRIM34Q9BYJ4 488 aa14.17□□□□□ -0.14
CLIP1-219ENST00000620786 GBP4Q96PP9 640 aa14.16□□□□□ -0.14
CLIP1-219ENST00000620786 NEXNQ0ZGT2 675 aa14.16□□□□□ -0.14
CLIP1-219ENST00000620786 FBXW7Q969H0 707 aa14.16□□□□□ -0.14
CLIP1-219ENST00000620786 NOL10Q9BSC4 688 aaKnown RBP14.16□□□□□ -0.14
CLIP1-219ENST00000620786 MYBBP1AQ9BQG0 1328 aaKnown RBP14.16□□□□□ -0.14
CLIP1-219ENST00000620786 CCDC34Q96HJ3 373 aa14.15□□□□□ -0.14
CLIP1-219ENST00000620786 AQRO60306 1485 aaKnown RBP eCLIP14.15□□□□□ -0.147e-7■■■■■ 48.1
CLIP1-219ENST00000620786 TPM4P67936 248 aa14.14□□□□□ -0.15
CLIP1-219ENST00000620786 PTMSP20962 102 aa14.14□□□□□ -0.15
CLIP1-219ENST00000620786 MSNP26038 577 aaKnown RBP14.14□□□□□ -0.15
CLIP1-219ENST00000620786 RAD21O60216 631 aa14.13□□□□□ -0.15
CLIP1-219ENST00000620786 AMOTL1Q8IY63 956 aa14.13□□□□□ -0.15
CLIP1-219ENST00000620786 NECTIN2Q92692 538 aa14.13□□□□□ -0.15
CLIP1-219ENST00000620786 CTDP1Q9Y5B0 961 aaPredicted RBP14.13□□□□□ -0.15
CLIP1-219ENST00000620786 DIAPH1O60610 1272 aaKnown RBP14.12□□□□□ -0.15
CLIP1-219ENST00000620786 RUSC2Q8N2Y8 1516 aa14.12□□□□□ -0.15
CLIP1-219ENST00000620786 RILPL2Q969X0 211 aa14.12□□□□□ -0.15
CLIP1-219ENST00000620786 PDE3BQ13370 1112 aa14.11□□□□□ -0.15
CLIP1-219ENST00000620786 C9orf78Q9NZ63 289 aaPredicted RBP14.11□□□□□ -0.15
CLIP1-219ENST00000620786 CREBRFQ8IUR6 639 aa14.11□□□□□ -0.15
CLIP1-219ENST00000620786 VPS37DQ86XT2 251 aa14.11□□□□□ -0.15
CLIP1-219ENST00000620786 SYAP1Q96A49 352 aaPredicted RBP14.11□□□□□ -0.15
CLIP1-219ENST00000620786 PRM3Q9NNZ6 103 aa14.11□□□□□ -0.15
CLIP1-219ENST00000620786 KIF16BQ96L93 1317 aa14.11□□□□□ -0.15
CLIP1-219ENST00000620786 SLKQ9H2G2 1235 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-219ENST00000620786 DHX57Q6P158 1386 aaKnown RBP14.1□□□□□ -0.15
CLIP1-219ENST00000620786 MYOM3Q5VTT5 1437 aa14.1□□□□□ -0.15
CLIP1-219ENST00000620786 ARHGAP5Q13017 1502 aa14.1□□□□□ -0.15
CLIP1-219ENST00000620786 RAPGEF4Q8WZA2 1011 aa14.1□□□□□ -0.15
CLIP1-219ENST00000620786 USP47Q96K76 1375 aa14.1□□□□□ -0.15
CLIP1-219ENST00000620786 BCL2L13Q9BXK5 485 aa14.1□□□□□ -0.15
CLIP1-219ENST00000620786 NUTM2GQ5VZR2 741 aa14.09□□□□□ -0.15
CLIP1-219ENST00000620786 TCERG1O14776 1098 aaKnown RBP14.09□□□□□ -0.15
CLIP1-219ENST00000620786 NOC3LQ8WTT2 800 aaKnown RBP14.09□□□□□ -0.15
CLIP1-219ENST00000620786 CSPP1Q1MSJ5 1256 aa14.09□□□□□ -0.15
CLIP1-219ENST00000620786 FOXD4L1Q9NU39 408 aa14.09□□□□□ -0.15
CLIP1-219ENST00000620786 DDX58O95786 925 aaKnown RBP14.08□□□□□ -0.15
CLIP1-219ENST00000620786 AKAP17AQ02040 695 aaKnown RBP14.08□□□□□ -0.16
CLIP1-219ENST00000620786 NLRP2Q9NX02 1062 aa14.08□□□□□ -0.16
CLIP1-219ENST00000620786 KIF3AQ9Y496 699 aa14.08□□□□□ -0.16
CLIP1-219ENST00000620786 PDE4CQ08493 712 aa14.07□□□□□ -0.16
CLIP1-219ENST00000620786 TCEAL9Q9UHQ7 104 aa14.07□□□□□ -0.16
CLIP1-219ENST00000620786 LRRFIP1Q32MZ4 808 aaKnown RBP14.07□□□□□ -0.16
CLIP1-219ENST00000620786 CUX1P39880 1505 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 ANKRD45Q5TZF3 282 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
CLIP1-219ENST00000620786 E9PSI1 815 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 ZKSCAN2Q63HK3 967 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 ST18O60284 1047 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 SYNE3Q6ZMZ3 975 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
CLIP1-219ENST00000620786 GZF1Q9H116 711 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms