RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 COL16A1Q07092 1604 aaPredicted RBP5.63□□□□□ -1.51
VRK3-204ENST00000593912 ABCC1P33527 1531 aa5.63□□□□□ -1.51
VRK3-204ENST00000593912 MED14O60244 1454 aa5.62□□□□□ -1.51
VRK3-204ENST00000593912 DEPDC5O75140 1603 aa5.62□□□□□ -1.51
VRK3-204ENST00000593912 MYO5CQ9NQX4 1742 aa5.62□□□□□ -1.51
VRK3-204ENST00000593912 KIDINS220Q9ULH0 1771 aa5.62□□□□□ -1.51
VRK3-204ENST00000593912 AFF2P51816 1311 aa5.61□□□□□ -1.51
VRK3-204ENST00000593912 ZC3H13Q5T200 1668 aaKnown RBP5.61□□□□□ -1.51
VRK3-204ENST00000593912 ATAD2Q6PL18 1390 aa5.61□□□□□ -1.51
VRK3-204ENST00000593912 ANKLE2Q86XL3 938 aa5.61□□□□□ -1.51
VRK3-204ENST00000593912 NHSL1Q5SYE7 1610 aa5.6□□□□□ -1.51
VRK3-204ENST00000593912 PLEKHD1A6NEE1 506 aa5.6□□□□□ -1.51
VRK3-204ENST00000593912 SHPRHQ149N8 1683 aa5.59□□□□□ -1.51
VRK3-204ENST00000593912 MLH3Q9UHC1 1453 aa5.59□□□□□ -1.51
VRK3-204ENST00000593912 PSDA5PKW4 1024 aaPredicted RBP5.59□□□□□ -1.51
VRK3-204ENST00000593912 SPATA31A6Q5VVP1 1343 aa5.58□□□□□ -1.52
VRK3-204ENST00000593912 RBM6P78332 1123 aaKnown RBP5.58□□□□□ -1.52
VRK3-204ENST00000593912 EFCAB2Q5VUJ9 269 aa5.58□□□□□ -1.52
VRK3-204ENST00000593912 FBXO31Q5XUX0 539 aaPredicted RBP5.58□□□□□ -1.52
VRK3-204ENST00000593912 PIAS4Q8N2W9 510 aaPredicted RBP5.58□□□□□ -1.52
VRK3-204ENST00000593912 ADGBQ8N7X0 1667 aa5.58□□□□□ -1.52
VRK3-204ENST00000593912 MAP3K1Q13233 1512 aa5.58□□□□□ -1.52
VRK3-204ENST00000593912 DEFB132Q7Z7B7 95 aa5.57□□□□□ -1.52
VRK3-204ENST00000593912 QTRT2Q9H974 415 aaKnown RBP5.57□□□□□ -1.52
VRK3-204ENST00000593912 ARHGAP5Q13017 1502 aa5.57□□□□□ -1.52
VRK3-204ENST00000593912 TMEM94Q12767 1356 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 TNRQ92752 1358 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 KIF14Q15058 1648 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 UGGT1Q9NYU2 1555 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 HRCP23327 699 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 LRRC9Q6ZRR7 1453 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 BCL9LQ86UU0 1499 aa5.56□□□□□ -1.52
VRK3-204ENST00000593912 SAMD9Q5K651 1589 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 KDM5DQ9BY66 1539 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 C1QTNF8P60827 252 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 GGT6Q6P531 493 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 FAM9AQ8IZU1 332 aaPredicted RBP5.55□□□□□ -1.52
VRK3-204ENST00000593912 FGD6Q6ZV73 1430 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 NWD1Q149M9 1564 aa5.55□□□□□ -1.52
VRK3-204ENST00000593912 CDC42BPBQ9Y5S2 1711 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 ATP7AQ04656 1500 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 FAM135AQ9P2D6 1515 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 SLC34A2O95436 690 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 THEMISQ8N1K5 641 aaPredicted RBP5.54□□□□□ -1.52
VRK3-204ENST00000593912 ZNF784Q8NCA9 323 aaPredicted RBP5.54□□□□□ -1.52
VRK3-204ENST00000593912 C8orf37Q96NL8 207 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 DIP2AQ14689 1571 aa5.54□□□□□ -1.52
VRK3-204ENST00000593912 CAMTA1Q9Y6Y1 1673 aa5.53□□□□□ -1.52
VRK3-204ENST00000593912 PLXNC1O60486 1568 aa5.53□□□□□ -1.52
VRK3-204ENST00000593912 TIAM1Q13009 1591 aa5.53□□□□□ -1.52
VRK3-204ENST00000593912 SAMD9LQ8IVG5 1584 aa5.52□□□□□ -1.53
VRK3-204ENST00000593912 EHMT2Q96KQ7 1210 aa5.52□□□□□ -1.53
VRK3-204ENST00000593912 SLAIN2Q9P270 581 aa5.52□□□□□ -1.53
VRK3-204ENST00000593912 AHDC1Q5TGY3 1603 aaPredicted RBP5.52□□□□□ -1.53
VRK3-204ENST00000593912 UTRNP46939 3433 aa5.51□□□□□ -1.53
VRK3-204ENST00000593912 CAPN15O75808 1086 aa5.51□□□□□ -1.53
VRK3-204ENST00000593912 BLMP54132 1417 aaPredicted RBP5.5□□□□□ -1.53
VRK3-204ENST00000593912 PROSER2Q86WR7 435 aaPredicted RBP5.5□□□□□ -1.53
VRK3-204ENST00000593912 CCDC125Q86Z20 511 aa5.5□□□□□ -1.53
VRK3-204ENST00000593912 NGLY1Q96IV0 654 aa5.5□□□□□ -1.53
VRK3-204ENST00000593912 A2MP01023 1474 aa5.5□□□□□ -1.53
VRK3-204ENST00000593912 PZPP20742 1482 aa5.5□□□□□ -1.53
VRK3-204ENST00000593912 SCAF11Q99590 1463 aaKnown RBP5.5□□□□□ -1.53
VRK3-204ENST00000593912 NLRP1Q9C000 1473 aa5.5□□□□□ -1.53
VRK3-204ENST00000593912 KDM5AP29375 1690 aaKnown RBP5.5□□□□□ -1.53
VRK3-204ENST00000593912 MIA2Q96PC5 1412 aa5.49□□□□□ -1.53
VRK3-204ENST00000593912 LTKP29376 864 aa5.49□□□□□ -1.53
VRK3-204ENST00000593912 RANGAP1P46060 587 aaPredicted RBP5.49□□□□□ -1.53
VRK3-204ENST00000593912 MSH6P52701 1360 aa5.49□□□□□ -1.53
VRK3-204ENST00000593912 PRDM15P57071 1507 aaPredicted RBP5.48□□□□□ -1.53
VRK3-204ENST00000593912 PREX2Q70Z35 1606 aa5.48□□□□□ -1.53
VRK3-204ENST00000593912 UBR1Q8IWV7 1749 aa5.48□□□□□ -1.53
VRK3-204ENST00000593912 MAST1Q9Y2H9 1570 aa5.48□□□□□ -1.53
VRK3-204ENST00000593912 R3HDM1Q15032 1099 aaKnown RBP5.48□□□□□ -1.53
VRK3-204ENST00000593912 BRWD3Q6RI45 1802 aa5.48□□□□□ -1.53
VRK3-204ENST00000593912 INO80Q9ULG1 1556 aaPredicted RBP5.47□□□□□ -1.53
VRK3-204ENST00000593912 NCOA2Q15596 1464 aa5.47□□□□□ -1.53
VRK3-204ENST00000593912 SUPT5HO00267 1087 aaKnown RBP5.47□□□□□ -1.53
VRK3-204ENST00000593912 ADAMTS2O95450 1211 aa5.47□□□□□ -1.53
VRK3-204ENST00000593912 USP21Q9UK80 565 aa5.46□□□□□ -1.54
VRK3-204ENST00000593912 SYCP2Q9BX26 1530 aa5.46□□□□□ -1.54
VRK3-204ENST00000593912 RTEL1-TNFRSF6BF6WH68 1400 aa5.46□□□□□ -1.54
VRK3-204ENST00000593912 ATRNO75882 1429 aa5.46□□□□□ -1.54
VRK3-204ENST00000593912 SPAG9O60271 1321 aaKnown RBP5.46□□□□□ -1.54
VRK3-204ENST00000593912 TXNDC2Q86VQ3 553 aa5.45□□□□□ -1.54
VRK3-204ENST00000593912 TRPC5Q9UL62 973 aaPredicted RBP5.45□□□□□ -1.54
VRK3-204ENST00000593912 CFAP65Q6ZU64 1925 aaKnown RBP5.44□□□□□ -1.54
VRK3-204ENST00000593912 ABCC3O15438 1527 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 KCNA6P17658 529 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 SF3B2Q13435 895 aaKnown RBP5.44□□□□□ -1.54
VRK3-204ENST00000593912 CDC42BPAQ5VT25 1732 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 SLC26A8Q96RN1 970 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.44□□□□□ -1.54
VRK3-204ENST00000593912 NKTRP30414 1462 aaKnown RBP5.44□□□□□ -1.54
VRK3-204ENST00000593912 PRXQ9BXM0 1461 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 ARHGAP23Q9P227 1491 aa5.44□□□□□ -1.54
VRK3-204ENST00000593912 SLIT1O75093 1534 aa5.43□□□□□ -1.54
VRK3-204ENST00000593912 PNPLA6Q8IY17 1366 aa5.43□□□□□ -1.54
VRK3-204ENST00000593912 UNC13BO14795 1591 aa5.43□□□□□ -1.54
VRK3-204ENST00000593912 CHD4Q14839 1912 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms