RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 FBXO31Q5XUX0 539 aaPredicted RBP18.3■□□□□ 0.52
CCDC47-206ENST00000584112 GGT6Q6P531 493 aa18.3■□□□□ 0.52
CCDC47-206ENST00000584112 MEX3CQ5U5Q3 659 aaKnown RBP18.28■□□□□ 0.52
CCDC47-206ENST00000584112 TNRQ92752 1358 aa18.28■□□□□ 0.52
CCDC47-206ENST00000584112 JCADQ9P266 1359 aa18.28■□□□□ 0.52
CCDC47-206ENST00000584112 CDC42BPBQ9Y5S2 1711 aa18.27■□□□□ 0.52
CCDC47-206ENST00000584112 CDK12Q9NYV4 1490 aaPredicted RBP18.26■□□□□ 0.51
CCDC47-206ENST00000584112 PHLPP1O60346 1717 aa18.26■□□□□ 0.51
CCDC47-206ENST00000584112 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
CCDC47-206ENST00000584112 FMN1Q68DA7 1419 aa18.24■□□□□ 0.51
CCDC47-206ENST00000584112 ARHGAP35Q9NRY4 1499 aa18.24■□□□□ 0.51
CCDC47-206ENST00000584112 THEMISQ8N1K5 641 aaPredicted RBP18.23■□□□□ 0.51
CCDC47-206ENST00000584112 RGS12O14924 1447 aa18.23■□□□□ 0.51
CCDC47-206ENST00000584112 ZC3H13Q5T200 1668 aaKnown RBP18.22■□□□□ 0.51
CCDC47-206ENST00000584112 NUTM2BA6NNL0 878 aaPredicted RBP18.21■□□□□ 0.51
CCDC47-206ENST00000584112 NUTM2EB1AL46 878 aaPredicted RBP18.21■□□□□ 0.51
CCDC47-206ENST00000584112 NUTM2DQ5VT03 806 aaPredicted RBP18.21■□□□□ 0.51
CCDC47-206ENST00000584112 NUTM2AQ8IVF1 878 aaPredicted RBP18.21■□□□□ 0.51
CCDC47-206ENST00000584112 PLXNC1O60486 1568 aa18.2■□□□□ 0.5
CCDC47-206ENST00000584112 SAMD9LQ8IVG5 1584 aa18.2■□□□□ 0.5
CCDC47-206ENST00000584112 UGGT1Q9NYU2 1555 aa18.2■□□□□ 0.5
CCDC47-206ENST00000584112 FAM135AQ9P2D6 1515 aa18.18■□□□□ 0.5
CCDC47-206ENST00000584112 LRRIQ1Q96JM4 1722 aa18.18■□□□□ 0.5
CCDC47-206ENST00000584112 COL16A1Q07092 1604 aaPredicted RBP18.16■□□□□ 0.5
CCDC47-206ENST00000584112 A2MP01023 1474 aa18.15■□□□□ 0.5
CCDC47-206ENST00000584112 ATP1B4Q9UN42 357 aaPredicted RBP18.14■□□□□ 0.49
CCDC47-206ENST00000584112 TMEM94Q12767 1356 aa18.14■□□□□ 0.49
CCDC47-206ENST00000584112 FOXD1Q16676 465 aa18.13■□□□□ 0.49
CCDC47-206ENST00000584112 SPAG9O60271 1321 aaKnown RBP18.13■□□□□ 0.49
CCDC47-206ENST00000584112 SPATA31A6Q5VVP1 1343 aa18.13■□□□□ 0.49
CCDC47-206ENST00000584112 EP400Q96L91 3159 aa18.13■□□□□ 0.49
CCDC47-206ENST00000584112 PREX2Q70Z35 1606 aa18.12■□□□□ 0.49
CCDC47-206ENST00000584112 CDK11AQ9UQ88 783 aaPredicted RBP18.11■□□□□ 0.49
CCDC47-206ENST00000584112 KDM5DQ9BY66 1539 aa18.11■□□□□ 0.49
CCDC47-206ENST00000584112 TROQ12816 1431 aaPredicted RBP18.1■□□□□ 0.49
CCDC47-206ENST00000584112 AFF2P51816 1311 aa18.1■□□□□ 0.49
CCDC47-206ENST00000584112 ATP7AQ04656 1500 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 MAP3K1Q13233 1512 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 PZPP20742 1482 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 NLRP1Q9C000 1473 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 MIA2Q96PC5 1412 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 LRP5O75197 1615 aa18.09■□□□□ 0.49
CCDC47-206ENST00000584112 LRRC9Q6ZRR7 1453 aa18.08■□□□□ 0.49
CCDC47-206ENST00000584112 ATAD2Q6PL18 1390 aa18.07■□□□□ 0.48
CCDC47-206ENST00000584112 CCDC18Q5T9S5 1454 aa18.07■□□□□ 0.48
CCDC47-206ENST00000584112 CLIP1P30622 1438 aa18.06■□□□□ 0.48
CCDC47-206ENST00000584112 SYCP2Q9BX26 1530 aa18.05■□□□□ 0.48
CCDC47-206ENST00000584112 HNRNPMP52272 730 aaKnown RBP eCLIP18.05■□□□□ 0.48
CCDC47-206ENST00000584112 CASKIN1Q8WXD9 1431 aa18.05■□□□□ 0.48
CCDC47-206ENST00000584112 SHPRHQ149N8 1683 aa18.04■□□□□ 0.48
CCDC47-206ENST00000584112 RBM6P78332 1123 aaKnown RBP18.04■□□□□ 0.48
CCDC47-206ENST00000584112 SLAIN2Q9P270 581 aa18.04■□□□□ 0.48
CCDC47-206ENST00000584112 ZNF777Q9ULD5 760 aaPredicted RBP18.04■□□□□ 0.48
CCDC47-206ENST00000584112 INO80Q9ULG1 1556 aaPredicted RBP18.04■□□□□ 0.48
CCDC47-206ENST00000584112 QTRT2Q9H974 415 aaKnown RBP18.03■□□□□ 0.48
CCDC47-206ENST00000584112 FGD6Q6ZV73 1430 aa18.03■□□□□ 0.48
CCDC47-206ENST00000584112 FYCO1Q9BQS8 1478 aa18.02■□□□□ 0.48
CCDC47-206ENST00000584112 YY1P25490 414 aa18.02■□□□□ 0.48
CCDC47-206ENST00000584112 LTKP29376 864 aa18.02■□□□□ 0.48
CCDC47-206ENST00000584112 SCAF11Q99590 1463 aaKnown RBP18.01■□□□□ 0.47
CCDC47-206ENST00000584112 CDC42BPAQ5VT25 1732 aa18.01■□□□□ 0.47
CCDC47-206ENST00000584112 PROSER2Q86WR7 435 aaPredicted RBP18■□□□□ 0.47
CCDC47-206ENST00000584112 ADGBQ8N7X0 1667 aa17.96■□□□□ 0.47
CCDC47-206ENST00000584112 TXNDC2Q86VQ3 553 aa17.95■□□□□ 0.46
CCDC47-206ENST00000584112 TIAM1Q13009 1591 aa17.95■□□□□ 0.46
CCDC47-206ENST00000584112 MSH6P52701 1360 aa17.93■□□□□ 0.46
CCDC47-206ENST00000584112 UBR1Q8IWV7 1749 aa17.93■□□□□ 0.46
CCDC47-206ENST00000584112 C8orf37Q96NL8 207 aa17.93■□□□□ 0.46
CCDC47-206ENST00000584112 WASHC2CQ9Y4E1 1318 aa17.92■□□□□ 0.46
CCDC47-206ENST00000584112 NCOA2Q15596 1464 aa17.91■□□□□ 0.46
CCDC47-206ENST00000584112 KCNA6P17658 529 aa17.91■□□□□ 0.46
CCDC47-206ENST00000584112 PRDM15P57071 1507 aaPredicted RBP17.91■□□□□ 0.46
CCDC47-206ENST00000584112 KIF3BO15066 747 aa17.9■□□□□ 0.46
CCDC47-206ENST00000584112 DIP2AQ14689 1571 aa17.9■□□□□ 0.46
CCDC47-206ENST00000584112 AHDC1Q5TGY3 1603 aaPredicted RBP17.89■□□□□ 0.45
CCDC47-206ENST00000584112 SENP3-EIF4A1A0A087X0R7 540 aa17.87■□□□□ 0.45
CCDC47-206ENST00000584112 PSDA5PKW4 1024 aaPredicted RBP17.87■□□□□ 0.45
CCDC47-206ENST00000584112 NGLY1Q96IV0 654 aa17.87■□□□□ 0.45
CCDC47-206ENST00000584112 CFAP65Q6ZU64 1925 aaKnown RBP17.87■□□□□ 0.45
CCDC47-206ENST00000584112 ARHGAP23Q9P227 1491 aa17.87■□□□□ 0.45
CCDC47-206ENST00000584112 DEFB132Q7Z7B7 95 aa17.86■□□□□ 0.45
CCDC47-206ENST00000584112 CCDC125Q86Z20 511 aa17.86■□□□□ 0.45
CCDC47-206ENST00000584112 KDM5AP29375 1690 aaKnown RBP17.86■□□□□ 0.45
CCDC47-206ENST00000584112 SLIT1O75093 1534 aa17.85■□□□□ 0.45
CCDC47-206ENST00000584112 NWD1Q149M9 1564 aa17.85■□□□□ 0.45
CCDC47-206ENST00000584112 NHSL1Q5SYE7 1610 aa17.85■□□□□ 0.45
CCDC47-206ENST00000584112 CEP162Q5TB80 1403 aa17.85■□□□□ 0.45
CCDC47-206ENST00000584112 DHX29Q7Z478 1369 aaKnown RBP17.84■□□□□ 0.45
CCDC47-206ENST00000584112 SLC26A8Q96RN1 970 aa17.84■□□□□ 0.45
CCDC47-206ENST00000584112 HRCP23327 699 aa17.83■□□□□ 0.44
CCDC47-206ENST00000584112 NKTRP30414 1462 aaKnown RBP17.81■□□□□ 0.44
CCDC47-206ENST00000584112 ERVK-7P63135 1459 aa17.81■□□□□ 0.44
CCDC47-206ENST00000584112 EID1Q9Y6B2 187 aa17.8■□□□□ 0.44
CCDC47-206ENST00000584112 KIAA1107Q9UPP5 1409 aa17.8■□□□□ 0.44
CCDC47-206ENST00000584112 MTUS2Q5JR59 1369 aa17.79■□□□□ 0.44
CCDC47-206ENST00000584112 ABCC3O15438 1527 aa17.79■□□□□ 0.44
CCDC47-206ENST00000584112 EHBP1L1Q8N3D4 1523 aa17.79■□□□□ 0.44
CCDC47-206ENST00000584112 GPATCH8Q9UKJ3 1502 aaKnown RBP17.78■□□□□ 0.44
CCDC47-206ENST00000584112 MAST1Q9Y2H9 1570 aa17.77■□□□□ 0.44
CCDC47-206ENST00000584112 ADAMTS2O95450 1211 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms