RNA–Protein interactions for RNA: ENST00000579081.5

NF1-219, Transcript of neurofibromin 1, humanhuman

TSL 1 (best)

Gene NF1, Length 8,788 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-219ENST00000579081 RWDD1Q9H446 243 aaPredicted RBP6.33□□□□□ -1.4
NF1-219ENST00000579081 TRIM6-TRIM34B2RNG4 842 aa6.33□□□□□ -1.4
NF1-219ENST00000579081 STAC3Q96MF2 364 aa6.33□□□□□ -1.4
NF1-219ENST00000579081 FAM193AP78312 1265 aa6.33□□□□□ -1.4
NF1-219ENST00000579081 GZF1Q9H116 711 aaPredicted RBP6.33□□□□□ -1.4
NF1-219ENST00000579081 ITPRIPQ8IWB1 547 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 TRIM34Q9BYJ4 488 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.32□□□□□ -1.42e-8■■■■■ 66.7
NF1-219ENST00000579081 NINLQ9Y2I6 1382 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 TPM1P09493 284 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 AKAP17AQ02040 695 aaKnown RBP6.32□□□□□ -1.4
NF1-219ENST00000579081 FANCIQ9NVI1 1328 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 HMMRO75330 724 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 SPAG9O60271 1321 aaKnown RBP6.32□□□□□ -1.4
NF1-219ENST00000579081 MSH5O43196 834 aa6.32□□□□□ -1.4
NF1-219ENST00000579081 NOM1Q5C9Z4 860 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 STK26Q9P289 416 aa6.31□□□□□ -1.4
NF1-219ENST00000579081 POLR3GO15318 223 aaPredicted RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 GPS2Q13227 327 aa6.31□□□□□ -1.4
NF1-219ENST00000579081 PDE3BQ13370 1112 aa6.31□□□□□ -1.4
NF1-219ENST00000579081 CCDC47Q96A33 483 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 CCAR2Q8N163 923 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 TCERG1O14776 1098 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 NOL8Q76FK4 1167 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 NOL10Q9BSC4 688 aaKnown RBP6.31□□□□□ -1.4
NF1-219ENST00000579081 ATAD2Q6PL18 1390 aa6.31□□□□□ -1.4
NF1-219ENST00000579081 RAD21O60216 631 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 DEKP35659 375 aaKnown RBP6.3□□□□□ -1.4
NF1-219ENST00000579081 AMOTL1Q8IY63 956 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 PDCL2Q8N4E4 241 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 PCMTD1Q96MG8 357 aaPredicted RBP6.3□□□□□ -1.4
NF1-219ENST00000579081 EIF3DO15371 548 aaKnown RBP eCLIP6.3□□□□□ -1.4
NF1-219ENST00000579081 CAGE1Q8TC20 777 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 SYNE3Q6ZMZ3 975 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 CCDC66A2RUB6 948 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 AEBP1Q8IUX7 1158 aa6.3□□□□□ -1.4
NF1-219ENST00000579081 U2AF1L5P0DN76 240 aaPredicted RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 U2AF1Q01081 240 aaKnown RBP eCLIP6.29□□□□□ -1.42e-6■□□□□ 9.2
NF1-219ENST00000579081 MFAP1P55081 439 aaKnown RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 HMGN5P82970 282 aaKnown RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.29□□□□□ -1.4
NF1-219ENST00000579081 SLKQ9H2G2 1235 aaPredicted RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 H3BQV1 296 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 HOXA7P31268 230 aaPredicted RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 SH3BGRP55822 239 aaPredicted RBP6.29□□□□□ -1.4
NF1-219ENST00000579081 IFFO2Q5TF58 517 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 DCAF11Q8TEB1 546 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 USP8P40818 1118 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 SLC4A10Q6U841 1118 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 PMFBP1Q8TBY8 1022 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 FAM184AQ8NB25 1140 aa6.29□□□□□ -1.4
NF1-219ENST00000579081 TNIKQ9UKE5 1360 aa6.28□□□□□ -1.4
NF1-219ENST00000579081 IPO7O95373 1038 aaKnown RBP6.28□□□□□ -1.4
NF1-219ENST00000579081 ROCK1Q13464 1354 aa6.28□□□□□ -1.4
NF1-219ENST00000579081 CCDC43Q96MW1 224 aaKnown RBP6.28□□□□□ -1.4
NF1-219ENST00000579081 DCAF8L1A6NGE4 600 aa6.28□□□□□ -1.4
NF1-219ENST00000579081 GOLGA6L19H0YKK7 550 aa6.28□□□□□ -1.4
NF1-219ENST00000579081 CDR1P51861 262 aa6.28□□□□□ -1.4
NF1-219ENST00000579081 CCDC18Q5T9S5 1454 aa6.27□□□□□ -1.4
NF1-219ENST00000579081 ANKRD30AQ9BXX3 1397 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 TUBB4BP68371 445 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 FOXD4L1Q9NU39 408 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 R3HCC1Q9Y3T6 440 aaKnown RBP6.27□□□□□ -1.41
NF1-219ENST00000579081 BECN2A8MW95 431 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 DHX16O60231 1041 aaKnown RBP6.27□□□□□ -1.41
NF1-219ENST00000579081 GGT6Q6P531 493 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 CWC15Q9P013 229 aaKnown RBP6.27□□□□□ -1.41
NF1-219ENST00000579081 ANKRD20A12PQ8NF67 263 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 CPLX2Q6PUV4 134 aaKnown RBP6.27□□□□□ -1.41
NF1-219ENST00000579081 FAM107BQ9H098 131 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 ODF2Q5BJF6 829 aa6.27□□□□□ -1.41
NF1-219ENST00000579081 PAXIP1Q6ZW49 1069 aaPredicted RBP6.27□□□□□ -1.41
NF1-219ENST00000579081 ST18O60284 1047 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 TRIM29Q14134 588 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 CT47A1Q5JQC4 288 aaPredicted RBP6.26□□□□□ -1.41
NF1-219ENST00000579081 PAF1Q8N7H5 531 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 FBXW7Q969H0 707 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 SMC4Q9NTJ3 1288 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 DDX11L8A8MPP1 907 aa6.26□□□□□ -1.41
NF1-219ENST00000579081 FOXD4L5Q5VV16 416 aaPredicted RBP6.26□□□□□ -1.41
NF1-219ENST00000579081 FOXD4L4Q8WXT5 416 aaPredicted RBP6.26□□□□□ -1.41
NF1-219ENST00000579081 NGDNQ8NEJ9 315 aaKnown RBP6.25□□□□□ -1.41
NF1-219ENST00000579081 AMPHP49418 695 aa6.25□□□□□ -1.41
NF1-219ENST00000579081 LMOD3Q0VAK6 560 aa6.25□□□□□ -1.41
NF1-219ENST00000579081 TUBB4AP04350 444 aa6.25□□□□□ -1.41
NF1-219ENST00000579081 HSP90AA2PQ14568 343 aaPredicted RBP6.25□□□□□ -1.41
NF1-219ENST00000579081 CTR9Q6PD62 1173 aa6.25□□□□□ -1.41
NF1-219ENST00000579081 LRRFIP1Q32MZ4 808 aaKnown RBP6.25□□□□□ -1.41
NF1-219ENST00000579081 LTV1Q96GA3 475 aaPredicted RBP6.25□□□□□ -1.41
NF1-219ENST00000579081 PLEKHH2Q8IVE3 1493 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 RRP9O43818 475 aaKnown RBP6.24□□□□□ -1.41
NF1-219ENST00000579081 EID1Q9Y6B2 187 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 ATP6V1DQ9Y5K8 247 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 MCTP1Q6DN14 999 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.24□□□□□ -1.41
NF1-219ENST00000579081 RUFY1Q96T51 708 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 CCP110O43303 1012 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 SIN3AQ96ST3 1273 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 ACBD3Q9H3P7 528 aa6.24□□□□□ -1.41
NF1-219ENST00000579081 EVA1CP58658 441 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 507.9 ms