RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 YY1AP1Q9H869 796 aa12.02□□□□□ -0.48
CDH1-205ENST00000562836 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.02□□□□□ -0.49
CDH1-205ENST00000562836 RIPK4P57078 832 aa12.01□□□□□ -0.49
CDH1-205ENST00000562836 KIAA1211Q6ZU35 1233 aa12.01□□□□□ -0.49
CDH1-205ENST00000562836 ARMCX6Q7L4S7 300 aa12.01□□□□□ -0.49
CDH1-205ENST00000562836 RB1CC1Q8TDY2 1594 aa12□□□□□ -0.49
CDH1-205ENST00000562836 MAP2K1Q02750 393 aaPredicted RBP12□□□□□ -0.49
CDH1-205ENST00000562836 PPP4R2Q9NY27 417 aa12□□□□□ -0.49
CDH1-205ENST00000562836 FOXD4L5Q5VV16 416 aaPredicted RBP11.99□□□□□ -0.49
CDH1-205ENST00000562836 FOXD4L4Q8WXT5 416 aaPredicted RBP11.99□□□□□ -0.49
CDH1-205ENST00000562836 DNAJC14Q6Y2X3 702 aaPredicted RBP11.99□□□□□ -0.49
CDH1-205ENST00000562836 KCNJ4P48050 445 aa11.98□□□□□ -0.49
CDH1-205ENST00000562836 B4GALNT3Q6L9W6 998 aa11.98□□□□□ -0.49
CDH1-205ENST00000562836 RBM25P49756 843 aaKnown RBP11.97□□□□□ -0.49
CDH1-205ENST00000562836 ZBTB7CA1YPR0 619 aa11.97□□□□□ -0.49
CDH1-205ENST00000562836 NBPF9Q3BBW0 867 aa11.96□□□□□ -0.5
CDH1-205ENST00000562836 CT47A1Q5JQC4 288 aaPredicted RBP11.96□□□□□ -0.5
CDH1-205ENST00000562836 TRIM52Q96A61 297 aa11.96□□□□□ -0.5
CDH1-205ENST00000562836 CT47B1P0C2W7 299 aaPredicted RBP11.95□□□□□ -0.5
CDH1-205ENST00000562836 OTUD6BQ8N6M0 293 aa11.95□□□□□ -0.5
CDH1-205ENST00000562836 TRIM6-TRIM34B2RNG4 842 aa11.95□□□□□ -0.5
CDH1-205ENST00000562836 CCDC96Q2M329 555 aa11.95□□□□□ -0.5
CDH1-205ENST00000562836 TRIM34Q9BYJ4 488 aa11.95□□□□□ -0.5
CDH1-205ENST00000562836 POLD1P28340 1107 aa11.94□□□□□ -0.5
CDH1-205ENST00000562836 SATB1Q01826 763 aa11.94□□□□□ -0.5
CDH1-205ENST00000562836 RINLQ6ZS11 566 aa11.94□□□□□ -0.5
CDH1-205ENST00000562836 BORCS6Q96GS4 357 aa11.94□□□□□ -0.5
CDH1-205ENST00000562836 L1TD1Q5T7N2 865 aaKnown RBP11.93□□□□□ -0.5
CDH1-205ENST00000562836 HSP90AB4PQ58FF6 505 aa11.92□□□□□ -0.5
CDH1-205ENST00000562836 PIK3R5Q8WYR1 880 aa11.92□□□□□ -0.5
CDH1-205ENST00000562836 TERF2IPQ9NYB0 399 aa11.91□□□□□ -0.5
CDH1-205ENST00000562836 MTMR7Q9Y216 660 aa11.91□□□□□ -0.5
CDH1-205ENST00000562836 RAD21O60216 631 aa11.91□□□□□ -0.5
CDH1-205ENST00000562836 CAPN2P17655 700 aa11.91□□□□□ -0.5
CDH1-205ENST00000562836 MTERF4Q7Z6M4 381 aaKnown RBP11.91□□□□□ -0.5
CDH1-205ENST00000562836 ESPNB1AK53 854 aa11.9□□□□□ -0.5
CDH1-205ENST00000562836 CCDC94Q9BW85 323 aaPredicted RBP11.9□□□□□ -0.5
CDH1-205ENST00000562836 CEP83Q9Y592 693 aa11.9□□□□□ -0.5
CDH1-205ENST00000562836 CASC1Q6TDU7 716 aa11.9□□□□□ -0.51
CDH1-205ENST00000562836 CALR3Q96L12 384 aaKnown RBP11.9□□□□□ -0.51
CDH1-205ENST00000562836 C1orf115Q9H7X2 142 aa11.89□□□□□ -0.51
CDH1-205ENST00000562836 FRAT2O75474 233 aaPredicted RBP11.89□□□□□ -0.51
CDH1-205ENST00000562836 SIRT1Q96EB6 747 aa11.89□□□□□ -0.51
CDH1-205ENST00000562836 GOLGA6L3A6NEY3 463 aa11.88□□□□□ -0.51
CDH1-205ENST00000562836 NBPF10Q6P3W6 841 aaKnown RBP11.87□□□□□ -0.51
CDH1-205ENST00000562836 RAI14Q9P0K7 980 aa11.87□□□□□ -0.51
CDH1-205ENST00000562836 NBPF6Q5VWK0 638 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 NBPF5PQ86XG9 351 aaPredicted RBP11.86□□□□□ -0.51
CDH1-205ENST00000562836 PIAS4Q8N2W9 510 aaPredicted RBP11.86□□□□□ -0.51
CDH1-205ENST00000562836 NBPF4Q96M43 638 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 ERBB4Q15303 1308 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 CBX1P83916 185 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 EXOC8Q8IYI6 725 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 SCRIBQ14160 1630 aa11.86□□□□□ -0.51
CDH1-205ENST00000562836 TSHZ1Q6ZSZ6 1077 aa11.85□□□□□ -0.51
CDH1-205ENST00000562836 SSR1P43307 286 aaKnown RBP11.84□□□□□ -0.51
CDH1-205ENST00000562836 KCTD17Q8N5Z5 321 aa11.84□□□□□ -0.51
CDH1-205ENST00000562836 CCDC172P0C7W6 258 aa11.84□□□□□ -0.51
CDH1-205ENST00000562836 XRCC6P12956 609 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDH1-205ENST00000562836 TNNT1P13805 278 aa11.83□□□□□ -0.52
CDH1-205ENST00000562836 POGKQ9P215 609 aa11.83□□□□□ -0.52
CDH1-205ENST00000562836 IPO8O15397 1037 aaKnown RBP11.83□□□□□ -0.52
CDH1-205ENST00000562836 PANK2Q9BZ23 570 aa11.83□□□□□ -0.52
CDH1-205ENST00000562836 MYCBPQ99417 103 aaPredicted RBP11.82□□□□□ -0.52
CDH1-205ENST00000562836 BRD1O95696 1058 aa11.82□□□□□ -0.52
CDH1-205ENST00000562836 MRVI1Q9Y6F6 885 aa11.81□□□□□ -0.52
CDH1-205ENST00000562836 ADRA2BP18089 450 aa11.8□□□□□ -0.52
CDH1-205ENST00000562836 BRPF1P55201 1214 aaPredicted RBP11.8□□□□□ -0.52
CDH1-205ENST00000562836 DNAJC21Q5F1R6 531 aaKnown RBP11.8□□□□□ -0.52
CDH1-205ENST00000562836 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
CDH1-205ENST00000562836 MPHOSPH10O00566 681 aaKnown RBP11.79□□□□□ -0.52
CDH1-205ENST00000562836 SPTY2D1Q68D10 685 aaPredicted RBP11.79□□□□□ -0.52
CDH1-205ENST00000562836 ZNF771Q7L3S4 317 aaPredicted RBP11.79□□□□□ -0.52
CDH1-205ENST00000562836 ATL2Q8NHH9 583 aa11.79□□□□□ -0.52
CDH1-205ENST00000562836 TERF1P54274 439 aa11.78□□□□□ -0.52
CDH1-205ENST00000562836 EFCC1Q9HA90 598 aa11.78□□□□□ -0.52
CDH1-205ENST00000562836 ZKSCAN8Q15776 578 aaPredicted RBP11.78□□□□□ -0.52
CDH1-205ENST00000562836 SLC4A3P48751 1232 aa11.77□□□□□ -0.53
CDH1-205ENST00000562836 GTF2A1P52655 376 aaPredicted RBP11.76□□□□□ -0.53
CDH1-205ENST00000562836 NUTM2GQ5VZR2 741 aa11.76□□□□□ -0.53
CDH1-205ENST00000562836 NCAPGQ9BPX3 1015 aa11.76□□□□□ -0.53
CDH1-205ENST00000562836 R3HCC1Q9Y3T6 440 aaKnown RBP11.76□□□□□ -0.53
CDH1-205ENST00000562836 UQCRHLA0A096LP55 91 aa11.76□□□□□ -0.53
CDH1-205ENST00000562836 UQCRHP07919 91 aa11.76□□□□□ -0.53
CDH1-205ENST00000562836 SCP2P22307 547 aa11.76□□□□□ -0.53
CDH1-205ENST00000562836 TNNT3P45378 269 aaPredicted RBP11.76□□□□□ -0.53
CDH1-205ENST00000562836 WRNQ14191 1432 aaPredicted RBP eCLIP11.75□□□□□ -0.53
CDH1-205ENST00000562836 OFD1O75665 1012 aa11.75□□□□□ -0.53
CDH1-205ENST00000562836 MTA1Q13330 715 aa11.75□□□□□ -0.53
CDH1-205ENST00000562836 ARHGEF1Q92888 912 aaKnown RBP11.75□□□□□ -0.53
CDH1-205ENST00000562836 DHX16O60231 1041 aaKnown RBP11.75□□□□□ -0.53
CDH1-205ENST00000562836 ARID3CA6NKF2 412 aa11.74□□□□□ -0.53
CDH1-205ENST00000562836 TIGD1Q96MW7 591 aa11.74□□□□□ -0.53
CDH1-205ENST00000562836 ANKRD23Q86SG2 305 aa11.73□□□□□ -0.53
CDH1-205ENST00000562836 TDO2P48775 406 aa11.73□□□□□ -0.53
CDH1-205ENST00000562836 CCT2P78371 535 aaKnown RBP11.73□□□□□ -0.53
CDH1-205ENST00000562836 GOLGA6CA6NDK9 693 aa11.73□□□□□ -0.53
CDH1-205ENST00000562836 GOLGA6BA6NDN3 693 aa11.73□□□□□ -0.53
CDH1-205ENST00000562836 GOLGA6DP0CG33 693 aa11.73□□□□□ -0.53
CDH1-205ENST00000562836 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms