RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 EN1Q05925 392 aaPredicted RBP13.25□□□□□ -0.29
RTF1-204ENST00000558117 TESPA1A2RU30 521 aaPredicted RBP13.24□□□□□ -0.29
RTF1-204ENST00000558117 TULP1O00294 542 aaPredicted RBP13.24□□□□□ -0.29
RTF1-204ENST00000558117 AXIN2Q9Y2T1 843 aa13.24□□□□□ -0.29
RTF1-204ENST00000558117 OSBPP22059 807 aa13.22□□□□□ -0.29
RTF1-204ENST00000558117 CCDC180Q9P1Z9 1646 aa13.21□□□□□ -0.29
RTF1-204ENST00000558117 PSEN2P49810 448 aa13.21□□□□□ -0.29
RTF1-204ENST00000558117 KRTAP3-3Q9BYR6 98 aa13.2□□□□□ -0.3
RTF1-204ENST00000558117 KRTAP3-2Q9BYR7 98 aa13.2□□□□□ -0.3
RTF1-204ENST00000558117 C6orf132Q5T0Z8 1188 aa13.19□□□□□ -0.3
RTF1-204ENST00000558117 POTEEQ6S8J3 1075 aa13.19□□□□□ -0.3
RTF1-204ENST00000558117 LSM11P83369 360 aaKnown RBP eCLIP13.18□□□□□ -0.3
RTF1-204ENST00000558117 PPP1R3GB7ZBB8 358 aa13.17□□□□□ -0.3
RTF1-204ENST00000558117 ANKRD13DQ6ZTN6 518 aa13.16□□□□□ -0.3
RTF1-204ENST00000558117 TSR1Q2NL82 804 aaKnown RBP13.15□□□□□ -0.3
RTF1-204ENST00000558117 PRIM1P49642 420 aaKnown RBP13.14□□□□□ -0.31
RTF1-204ENST00000558117 DMRTA1Q5VZB9 504 aa13.14□□□□□ -0.31
RTF1-204ENST00000558117 NUTM2FA1L443 756 aa13.11□□□□□ -0.31
RTF1-204ENST00000558117 CERKQ8TCT0 537 aa13.11□□□□□ -0.31
RTF1-204ENST00000558117 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
RTF1-204ENST00000558117 COL9A1P20849 921 aa13.1□□□□□ -0.31
RTF1-204ENST00000558117 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
RTF1-204ENST00000558117 CDHR5Q9HBB8 845 aa13.1□□□□□ -0.31
RTF1-204ENST00000558117 TK2O00142 265 aa13.09□□□□□ -0.31
RTF1-204ENST00000558117 RBM26Q5T8P6 1007 aaKnown RBP13.09□□□□□ -0.31
RTF1-204ENST00000558117 ZBED2Q9BTP6 218 aa13.09□□□□□ -0.31
RTF1-204ENST00000558117 ADGRD1Q6QNK2 874 aa13.08□□□□□ -0.32
RTF1-204ENST00000558117 SLC4A5Q9BY07 1137 aa13.07□□□□□ -0.32
RTF1-204ENST00000558117 STAC3Q96MF2 364 aa13.05□□□□□ -0.32
RTF1-204ENST00000558117 LMOD2Q6P5Q4 547 aa13.04□□□□□ -0.32
RTF1-204ENST00000558117 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
RTF1-204ENST00000558117 VPS9D1Q9Y2B5 631 aa13.04□□□□□ -0.32
RTF1-204ENST00000558117 FCHSD2O94868 740 aa13.03□□□□□ -0.32
RTF1-204ENST00000558117 PROX2Q3B8N5 592 aa13.03□□□□□ -0.32
RTF1-204ENST00000558117 TRIM6-TRIM34B2RNG4 842 aa13.01□□□□□ -0.33
RTF1-204ENST00000558117 CDCA7LQ96GN5 454 aa13.01□□□□□ -0.33
RTF1-204ENST00000558117 CECR2Q9BXF3 1484 aa13□□□□□ -0.33
RTF1-204ENST00000558117 PRSS12P56730 875 aa13□□□□□ -0.33
RTF1-204ENST00000558117 PTGDRQ13258 359 aa13□□□□□ -0.33
RTF1-204ENST00000558117 NBPF3Q9H094 633 aa13□□□□□ -0.33
RTF1-204ENST00000558117 RBM27Q9P2N5 1060 aaKnown RBP13□□□□□ -0.33
RTF1-204ENST00000558117 ONECUT3O60422 494 aaPredicted RBP12.99□□□□□ -0.33
RTF1-204ENST00000558117 SPNS2Q8IVW8 549 aa12.99□□□□□ -0.33
RTF1-204ENST00000558117 PACS2Q86VP3 889 aa12.98□□□□□ -0.33
RTF1-204ENST00000558117 NPDC1Q9NQX5 325 aaPredicted RBP12.98□□□□□ -0.33
RTF1-204ENST00000558117 RABGEF1Q9UJ41 708 aa12.98□□□□□ -0.33
RTF1-204ENST00000558117 HRO43593 1189 aa12.96□□□□□ -0.33
RTF1-204ENST00000558117 HIC1Q14526 733 aa12.96□□□□□ -0.33
RTF1-204ENST00000558117 PADI6Q6TGC4 694 aa12.96□□□□□ -0.33
RTF1-204ENST00000558117 KIAA1468Q9P260 1216 aa12.96□□□□□ -0.33
RTF1-204ENST00000558117 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
RTF1-204ENST00000558117 TSKSQ9UJT2 592 aa12.95□□□□□ -0.34
RTF1-204ENST00000558117 NBPF26B4DH59 902 aa12.94□□□□□ -0.34
RTF1-204ENST00000558117 GOLGA8CPA6NN73 597 aa12.93□□□□□ -0.34
RTF1-204ENST00000558117 MYT1LQ9UL68 1186 aa12.93□□□□□ -0.34
RTF1-204ENST00000558117 BHMG1C9JSJ3 638 aaPredicted RBP12.91□□□□□ -0.34
RTF1-204ENST00000558117 GNPATO15228 680 aa12.91□□□□□ -0.34
RTF1-204ENST00000558117 GPR37O15354 613 aa12.91□□□□□ -0.34
RTF1-204ENST00000558117 PNMA3Q9UL41 463 aa12.9□□□□□ -0.34
RTF1-204ENST00000558117 ZC3H15Q8WU90 426 aaKnown RBP12.89□□□□□ -0.35
RTF1-204ENST00000558117 FAM198AQ9UFP1 575 aa12.89□□□□□ -0.35
RTF1-204ENST00000558117 SEPT9Q9UHD8 586 aaPredicted RBP12.89□□□□□ -0.35
RTF1-204ENST00000558117 LAPTM4BQ86VI4 370 aa12.88□□□□□ -0.35
RTF1-204ENST00000558117 TTC13Q8NBP0 860 aa12.88□□□□□ -0.35
RTF1-204ENST00000558117 PLSCR2Q9NRY7 297 aa12.88□□□□□ -0.35
RTF1-204ENST00000558117 TATDN2Q93075 761 aa12.87□□□□□ -0.35
RTF1-204ENST00000558117 RNF166Q96A37 237 aaPredicted RBP12.87□□□□□ -0.35
RTF1-204ENST00000558117 MMRN1Q13201 1228 aa12.86□□□□□ -0.35
RTF1-204ENST00000558117 NUDT18Q6ZVK8 323 aa12.86□□□□□ -0.35
RTF1-204ENST00000558117 SMAPO00193 183 aa12.85□□□□□ -0.35
RTF1-204ENST00000558117 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
RTF1-204ENST00000558117 TPRNQ4KMQ1 711 aa12.85□□□□□ -0.35
RTF1-204ENST00000558117 CC2D2AQ9P2K1 1620 aa12.84□□□□□ -0.35
RTF1-204ENST00000558117 BICRAQ9NZM4 1560 aa12.83□□□□□ -0.36
RTF1-204ENST00000558117 FECHP22830 423 aa12.83□□□□□ -0.36
RTF1-204ENST00000558117 RBM46Q8TBY0 533 aaKnown RBP12.83□□□□□ -0.36
RTF1-204ENST00000558117 PRKCSHP14314 528 aaPredicted RBP12.82□□□□□ -0.36
RTF1-204ENST00000558117 ANKK1Q8NFD2 765 aa12.82□□□□□ -0.36
RTF1-204ENST00000558117 KCTD12Q96CX2 325 aaKnown RBP12.82□□□□□ -0.36
RTF1-204ENST00000558117 ZMYND10O75800 440 aa12.81□□□□□ -0.36
RTF1-204ENST00000558117 WNT2BQ93097 391 aa12.81□□□□□ -0.36
RTF1-204ENST00000558117 ZFRQ96KR1 1074 aaKnown RBP12.8□□□□□ -0.36
RTF1-204ENST00000558117 ADGRG1Q9Y653 693 aa12.8□□□□□ -0.36
RTF1-204ENST00000558117 NACADO15069 1562 aa12.79□□□□□ -0.36
RTF1-204ENST00000558117 C3orf80F5H4A9 247 aa12.78□□□□□ -0.36
RTF1-204ENST00000558117 OATP04181 439 aa12.78□□□□□ -0.36
RTF1-204ENST00000558117 HDGFP51858 240 aaKnown RBP12.78□□□□□ -0.36
RTF1-204ENST00000558117 MAP2K5Q13163 448 aa12.78□□□□□ -0.36
RTF1-204ENST00000558117 FAM161AQ3B820 660 aa12.78□□□□□ -0.36
RTF1-204ENST00000558117 BARGINQ6ZT62 677 aa12.77□□□□□ -0.37
RTF1-204ENST00000558117 KRI1Q8N9T8 703 aaKnown RBP12.77□□□□□ -0.37
RTF1-204ENST00000558117 LRCH3Q96II8 777 aa12.75□□□□□ -0.37
RTF1-204ENST00000558117 EYA1Q99502 592 aa12.75□□□□□ -0.37
RTF1-204ENST00000558117 UNC13AQ9UPW8 1703 aa12.74□□□□□ -0.37
RTF1-204ENST00000558117 CUX2O14529 1486 aa12.74□□□□□ -0.37
RTF1-204ENST00000558117 MINK1Q8N4C8 1332 aaPredicted RBP12.74□□□□□ -0.37
RTF1-204ENST00000558117 DNAJB2P25686 324 aa12.74□□□□□ -0.37
RTF1-204ENST00000558117 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.74□□□□□ -0.37
RTF1-204ENST00000558117 SLC4A3P48751 1232 aa12.73□□□□□ -0.37
RTF1-204ENST00000558117 PXYLP1Q8TE99 480 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms