RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 RBM33Q96EV2 1170 aaKnown RBP9.51□□□□□ -0.89
SRP54-212ENST00000556992 DDX12PQ92771 950 aa9.5□□□□□ -0.89
SRP54-212ENST00000556992 SEPT9Q9UHD8 586 aaPredicted RBP9.5□□□□□ -0.89
SRP54-212ENST00000556992 CAMK2BQ13554 666 aa9.49□□□□□ -0.89
SRP54-212ENST00000556992 RABGEF1Q9UJ41 708 aa9.49□□□□□ -0.89
SRP54-212ENST00000556992 FBXW7Q969H0 707 aa9.48□□□□□ -0.89
SRP54-212ENST00000556992 KIAA1468Q9P260 1216 aa9.48□□□□□ -0.89
SRP54-212ENST00000556992 C6orf132Q5T0Z8 1188 aa9.47□□□□□ -0.89
SRP54-212ENST00000556992 ANKK1Q8NFD2 765 aa9.47□□□□□ -0.89
SRP54-212ENST00000556992 A0A0G2JS52 829 aa9.44□□□□□ -0.9
SRP54-212ENST00000556992 TSR1Q2NL82 804 aaKnown RBP9.43□□□□□ -0.9
SRP54-212ENST00000556992 ZFRQ96KR1 1074 aaKnown RBP9.43□□□□□ -0.9
SRP54-212ENST00000556992 EPAS1Q99814 870 aa9.42□□□□□ -0.9
SRP54-212ENST00000556992 WBP1LQ9NX94 342 aa9.42□□□□□ -0.9
SRP54-212ENST00000556992 SOWAHBA6NEL2 793 aa9.41□□□□□ -0.9
SRP54-212ENST00000556992 NBR1Q14596 966 aa9.41□□□□□ -0.9
SRP54-212ENST00000556992 BBXQ8WY36 941 aaPredicted RBP9.41□□□□□ -0.9
SRP54-212ENST00000556992 TRIM6-TRIM34B2RNG4 842 aa9.4□□□□□ -0.9
SRP54-212ENST00000556992 IFFO2Q5TF58 517 aa9.4□□□□□ -0.9
SRP54-212ENST00000556992 MAP3K7O43318 606 aa9.38□□□□□ -0.91
SRP54-212ENST00000556992 PRIM1P49642 420 aaKnown RBP9.38□□□□□ -0.91
SRP54-212ENST00000556992 LAPTM4BQ86VI4 370 aa9.38□□□□□ -0.91
SRP54-212ENST00000556992 TSKSQ9UJT2 592 aa9.38□□□□□ -0.91
SRP54-212ENST00000556992 SMAPO00193 183 aa9.36□□□□□ -0.91
SRP54-212ENST00000556992 EN1Q05925 392 aaPredicted RBP9.36□□□□□ -0.91
SRP54-212ENST00000556992 IRX2Q9BZI1 471 aaPredicted RBP9.36□□□□□ -0.91
SRP54-212ENST00000556992 ITGBL1O95965 494 aaPredicted RBP9.35□□□□□ -0.91
SRP54-212ENST00000556992 PDIA6Q15084 440 aa9.35□□□□□ -0.91
SRP54-212ENST00000556992 FAM98CQ17RN3 349 aaKnown RBP9.35□□□□□ -0.91
SRP54-212ENST00000556992 HPS5Q9UPZ3 1129 aa9.35□□□□□ -0.91
SRP54-212ENST00000556992 SPRYD3Q8NCJ5 442 aa9.34□□□□□ -0.91
SRP54-212ENST00000556992 CFAP44Q96MT7 982 aa9.34□□□□□ -0.91
SRP54-212ENST00000556992 GRXCR2A6NFK2 248 aa9.33□□□□□ -0.92
SRP54-212ENST00000556992 C3orf80F5H4A9 247 aa9.33□□□□□ -0.92
SRP54-212ENST00000556992 ONECUT3O60422 494 aaPredicted RBP9.33□□□□□ -0.92
SRP54-212ENST00000556992 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.33□□□□□ -0.92
SRP54-212ENST00000556992 FAM198AQ9UFP1 575 aa9.33□□□□□ -0.92
SRP54-212ENST00000556992 LRCH3Q96II8 777 aa9.32□□□□□ -0.92
SRP54-212ENST00000556992 RGS20O76081 388 aa9.31□□□□□ -0.92
SRP54-212ENST00000556992 PAXIP1Q6ZW49 1069 aaPredicted RBP9.31□□□□□ -0.92
SRP54-212ENST00000556992 CDHR5Q9HBB8 845 aa9.3□□□□□ -0.92
SRP54-212ENST00000556992 TSR3Q9UJK0 312 aaKnown RBP9.3□□□□□ -0.92
SRP54-212ENST00000556992 KCNC4Q03721 635 aa9.29□□□□□ -0.92
SRP54-212ENST00000556992 E2F4Q16254 413 aa9.29□□□□□ -0.92
SRP54-212ENST00000556992 CDCA7LQ96GN5 454 aa9.29□□□□□ -0.92
SRP54-212ENST00000556992 SAMD7Q7Z3H4 446 aa9.28□□□□□ -0.92
SRP54-212ENST00000556992 PACS2Q86VP3 889 aa9.28□□□□□ -0.92
SRP54-212ENST00000556992 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.28□□□□□ -0.92
SRP54-212ENST00000556992 SPDYE16A6NNV3 312 aaPredicted RBP9.26□□□□□ -0.93
SRP54-212ENST00000556992 PRSS12P56730 875 aa9.26□□□□□ -0.93
SRP54-212ENST00000556992 NYAP1Q6ZVC0 841 aa9.26□□□□□ -0.93
SRP54-212ENST00000556992 RTN4Q9NQC3 1192 aaKnown RBP9.26□□□□□ -0.93
SRP54-212ENST00000556992 PNMA3Q9UL41 463 aa9.25□□□□□ -0.93
SRP54-212ENST00000556992 PPP4CP60510 307 aa9.24□□□□□ -0.93
SRP54-212ENST00000556992 WDR70Q9NW82 654 aa9.24□□□□□ -0.93
SRP54-212ENST00000556992 RNF40O75150 1001 aa9.23□□□□□ -0.93
SRP54-212ENST00000556992 OSBPP22059 807 aa9.23□□□□□ -0.93
SRP54-212ENST00000556992 TATDN2Q93075 761 aa9.23□□□□□ -0.93
SRP54-212ENST00000556992 NUDT18Q6ZVK8 323 aa9.21□□□□□ -0.94
SRP54-212ENST00000556992 Q6ZNB5 142 aa9.2□□□□□ -0.94
SRP54-212ENST00000556992 NBPF26B4DH59 902 aa9.19□□□□□ -0.94
SRP54-212ENST00000556992 TJAP1Q5JTD0 557 aa9.19□□□□□ -0.94
SRP54-212ENST00000556992 MTRQ99707 1265 aa9.18□□□□□ -0.94
SRP54-212ENST00000556992 AMER1Q5JTC6 1135 aaPredicted RBP9.17□□□□□ -0.94
SRP54-212ENST00000556992 PADI6Q6TGC4 694 aa9.17□□□□□ -0.94
SRP54-212ENST00000556992 ZNF516Q92618 1163 aa9.17□□□□□ -0.94
SRP54-212ENST00000556992 ARIH1Q9Y4X5 557 aaPredicted RBP9.17□□□□□ -0.94
SRP54-212ENST00000556992 APLP1P51693 650 aa9.16□□□□□ -0.94
SRP54-212ENST00000556992 CERKQ8TCT0 537 aa9.16□□□□□ -0.94
SRP54-212ENST00000556992 SWT1Q5T5J6 900 aaKnown RBP9.14□□□□□ -0.95
SRP54-212ENST00000556992 NPDC1Q9NQX5 325 aaPredicted RBP9.14□□□□□ -0.95
SRP54-212ENST00000556992 MLLT3P42568 568 aaPredicted RBP9.13□□□□□ -0.95
SRP54-212ENST00000556992 PPP1R18Q6NYC8 613 aa9.13□□□□□ -0.95
SRP54-212ENST00000556992 NKX2-3Q8TAU0 364 aa9.13□□□□□ -0.95
SRP54-212ENST00000556992 LCE2BO14633 110 aa9.12□□□□□ -0.95
SRP54-212ENST00000556992 PRKD2Q9BZL6 878 aa9.12□□□□□ -0.95
SRP54-212ENST00000556992 IL21Q9HBE4 155 aa9.12□□□□□ -0.95
SRP54-212ENST00000556992 COPS2P61201 443 aa9.11□□□□□ -0.95
SRP54-212ENST00000556992 GFRA3O60609 400 aa9.1□□□□□ -0.95
SRP54-212ENST00000556992 TSHZ2Q9NRE2 1034 aa9.1□□□□□ -0.95
SRP54-212ENST00000556992 HDGFP51858 240 aaKnown RBP9.09□□□□□ -0.95
SRP54-212ENST00000556992 TTC13Q8NBP0 860 aa9.09□□□□□ -0.95
SRP54-212ENST00000556992 RBM27Q9P2N5 1060 aaKnown RBP9.08□□□□□ -0.96
SRP54-212ENST00000556992 FAM161AQ3B820 660 aa9.06□□□□□ -0.96
SRP54-212ENST00000556992 KCNV2Q8TDN2 545 aa9.06□□□□□ -0.96
SRP54-212ENST00000556992 EYA1Q99502 592 aa9.05□□□□□ -0.96
SRP54-212ENST00000556992 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.05□□□□□ -0.96
SRP54-212ENST00000556992 SLF2Q8IX21 1173 aa9.03□□□□□ -0.96
SRP54-212ENST00000556992 TLL1O43897 1013 aa9.01□□□□□ -0.97
SRP54-212ENST00000556992 PTGDRQ13258 359 aa9□□□□□ -0.97
SRP54-212ENST00000556992 TRAF7Q6Q0C0 670 aa9□□□□□ -0.97
SRP54-212ENST00000556992 BLOC1S3Q6QNY0 202 aa9□□□□□ -0.97
SRP54-212ENST00000556992 LAPTM4AQ15012 233 aa8.99□□□□□ -0.97
SRP54-212ENST00000556992 PCDHB3Q9Y5E6 796 aa8.99□□□□□ -0.97
SRP54-212ENST00000556992 NUTM2FA1L443 756 aa8.98□□□□□ -0.97
SRP54-212ENST00000556992 ZPR1O75312 459 aa8.98□□□□□ -0.97
SRP54-212ENST00000556992 ARHGEF1Q92888 912 aaKnown RBP8.98□□□□□ -0.97
SRP54-212ENST00000556992 V9GY48 417 aaPredicted RBP8.98□□□□□ -0.97
SRP54-212ENST00000556992 NRG2O14511 850 aaPredicted RBP8.97□□□□□ -0.97
SRP54-212ENST00000556992 PDZRN3Q9UPQ7 1066 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms