RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 HNRNPUQ00839 825 aaKnown RBP eCLIP15.38■□□□□ 0.051e-6■■■■□ 21.8
CUX1-212ENST00000547394 FAM9BQ8IZU0 186 aa15.38■□□□□ 0.05
CUX1-212ENST00000547394 SCAPERQ9BY12 1400 aa15.38■□□□□ 0.05
CUX1-212ENST00000547394 CNTLNQ9NXG0 1405 aa15.38■□□□□ 0.05
CUX1-212ENST00000547394 ABCC1P33527 1531 aa15.38■□□□□ 0.05
CUX1-212ENST00000547394 FANCAO15360 1455 aa15.37■□□□□ 0.05
CUX1-212ENST00000547394 KIF3BO15066 747 aa15.37■□□□□ 0.05
CUX1-212ENST00000547394 SUPT16HQ9Y5B9 1047 aaKnown RBP15.37■□□□□ 0.05
CUX1-212ENST00000547394 KDM5DQ9BY66 1539 aa15.37■□□□□ 0.05
CUX1-212ENST00000547394 PRKRIP1Q9H875 184 aaPredicted RBP15.36■□□□□ 0.05
CUX1-212ENST00000547394 ROCK2O75116 1388 aaKnown RBP15.35■□□□□ 0.05
CUX1-212ENST00000547394 BCORL1Q5H9F3 1711 aa15.34■□□□□ 0.05
CUX1-212ENST00000547394 MRS2Q9HD23 443 aa15.34■□□□□ 0.05
CUX1-212ENST00000547394 DUOX2Q9NRD8 1548 aa15.33■□□□□ 0.04
CUX1-212ENST00000547394 CYB5RLQ6IPT4 315 aa15.33■□□□□ 0.04
CUX1-212ENST00000547394 ADGRL1O94910 1474 aa15.32■□□□□ 0.04
CUX1-212ENST00000547394 MAST1Q9Y2H9 1570 aa15.32■□□□□ 0.04
CUX1-212ENST00000547394 PLXNC1O60486 1568 aa15.3■□□□□ 0.04
CUX1-212ENST00000547394 SENP3Q9H4L4 574 aaPredicted RBP15.3■□□□□ 0.04
CUX1-212ENST00000547394 FKBP8Q14318 412 aa15.3■□□□□ 0.04
CUX1-212ENST00000547394 A2MP01023 1474 aa15.29■□□□□ 0.04
CUX1-212ENST00000547394 RALGAPBQ86X10 1494 aa15.29■□□□□ 0.04
CUX1-212ENST00000547394 RAPGEF3O95398 923 aa15.29■□□□□ 0.04
CUX1-212ENST00000547394 UNC13BO14795 1591 aa15.29■□□□□ 0.04
CUX1-212ENST00000547394 UHRF1BP1Q6BDS2 1440 aa15.28■□□□□ 0.04
CUX1-212ENST00000547394 ERBINQ96RT1 1412 aa15.28■□□□□ 0.04
CUX1-212ENST00000547394 ZFYVE16Q7Z3T8 1539 aa15.28■□□□□ 0.04
CUX1-212ENST00000547394 KDM5CP41229 1560 aa15.28■□□□□ 0.04
CUX1-212ENST00000547394 IRX6P78412 446 aaPredicted RBP15.27■□□□□ 0.03
CUX1-212ENST00000547394 GGT6Q6P531 493 aa15.27■□□□□ 0.03
CUX1-212ENST00000547394 PRAG1Q86YV5 1406 aa15.26■□□□□ 0.03
CUX1-212ENST00000547394 IQGAP3Q86VI3 1631 aa15.25■□□□□ 0.03
CUX1-212ENST00000547394 DHX29Q7Z478 1369 aaKnown RBP15.24■□□□□ 0.03
CUX1-212ENST00000547394 ATP7AQ04656 1500 aa15.24■□□□□ 0.03
CUX1-212ENST00000547394 CD109Q6YHK3 1445 aa15.24■□□□□ 0.03
CUX1-212ENST00000547394 CHGAP10645 457 aaKnown RBP15.23■□□□□ 0.03
CUX1-212ENST00000547394 ABCA9Q8IUA7 1624 aa15.23■□□□□ 0.03
CUX1-212ENST00000547394 UGGT1Q9NYU2 1555 aa15.21■□□□□ 0.03
CUX1-212ENST00000547394 MAGI2Q86UL8 1455 aa15.21■□□□□ 0.02
CUX1-212ENST00000547394 RTEL1-TNFRSF6BF6WH68 1400 aa15.2■□□□□ 0.02
CUX1-212ENST00000547394 ATP10AO60312 1499 aa15.2■□□□□ 0.02
CUX1-212ENST00000547394 E9PCH4 1651 aa15.19■□□□□ 0.02
CUX1-212ENST00000547394 DISP3Q9P2K9 1392 aa15.19■□□□□ 0.02
CUX1-212ENST00000547394 NUTM2DQ5VT03 806 aaPredicted RBP15.18■□□□□ 0.02
CUX1-212ENST00000547394 KANK1Q14678 1352 aa15.18■□□□□ 0.02
CUX1-212ENST00000547394 CC2D1BQ5T0F9 858 aaKnown RBP15.17■□□□□ 0.02
CUX1-212ENST00000547394 ARAP3Q8WWN8 1544 aa15.17■□□□□ 0.02
CUX1-212ENST00000547394 CFAP65Q6ZU64 1925 aaKnown RBP15.17■□□□□ 0.02
CUX1-212ENST00000547394 TESK2Q96S53 571 aa15.17■□□□□ 0.02
CUX1-212ENST00000547394 INO80Q9ULG1 1556 aaPredicted RBP15.16■□□□□ 0.02
CUX1-212ENST00000547394 TRPM1Q7Z4N2 1603 aa15.16■□□□□ 0.02
CUX1-212ENST00000547394 SALL2Q9Y467 1007 aaPredicted RBP15.15■□□□□ 0.02
CUX1-212ENST00000547394 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
CUX1-212ENST00000547394 NEFLP07196 543 aa15.14■□□□□ 0.01
CUX1-212ENST00000547394 TMC1Q8TDI8 760 aa15.14■□□□□ 0.01
CUX1-212ENST00000547394 KIDINS220Q9ULH0 1771 aa15.13■□□□□ 0.01
CUX1-212ENST00000547394 ADGRF5Q8IZF2 1346 aa15.13■□□□□ 0.01
CUX1-212ENST00000547394 ZNF518AQ6AHZ1 1483 aa15.13■□□□□ 0.01
CUX1-212ENST00000547394 CLTCL1P53675 1640 aa15.13■□□□□ 0.01
CUX1-212ENST00000547394 POLR1AO95602 1720 aaPredicted RBP15.12■□□□□ 0.01
CUX1-212ENST00000547394 PANK3Q9H999 370 aa15.12■□□□□ 0.01
CUX1-212ENST00000547394 WASHC2CQ9Y4E1 1318 aa15.12■□□□□ 0.01
CUX1-212ENST00000547394 POGZQ7Z3K3 1410 aa15.11■□□□□ 0.01
CUX1-212ENST00000547394 FAM69CQ0P6D2 419 aa15.11■□□□□ 0.01
CUX1-212ENST00000547394 MROH1Q8NDA8 1641 aa15.1■□□□□ 0.01
CUX1-212ENST00000547394 GPRASP1Q5JY77 1395 aa15.1■□□□□ 0.01
CUX1-212ENST00000547394 PRDM15P57071 1507 aaPredicted RBP15.09■□□□□ 0.01
CUX1-212ENST00000547394 PTPRTO14522 1441 aa15.09■□□□□ 0.01
CUX1-212ENST00000547394 TRPM2O94759 1503 aa15.09■□□□□ 0.01
CUX1-212ENST00000547394 ARID4BQ4LE39 1312 aaPredicted RBP15.09■□□□□ 0.01
CUX1-212ENST00000547394 TMF1P82094 1093 aa15.08■□□□□ 0.01
CUX1-212ENST00000547394 SPHKAPQ2M3C7 1700 aa15.08■□□□□ 0
CUX1-212ENST00000547394 DEPDC5O75140 1603 aa15.07■□□□□ 0
CUX1-212ENST00000547394 PNISRQ8TF01 805 aaKnown RBP15.07■□□□□ 0
CUX1-212ENST00000547394 YEATS2Q9ULM3 1422 aa15.06■□□□□ 0
CUX1-212ENST00000547394 PER1O15534 1290 aaPredicted RBP15.06■□□□□ 0
CUX1-212ENST00000547394 TMEM132EQ6IEE7 984 aa15.06■□□□□ 0
CUX1-212ENST00000547394 TET3O43151 1660 aa15.06■□□□□ 0
CUX1-212ENST00000547394 FRMPD1Q5SYB0 1578 aa15.05■□□□□ 0
CUX1-212ENST00000547394 CEP152O94986 1710 aa15.05■□□□□ -0
CUX1-212ENST00000547394 PPRC1Q5VV67 1664 aaKnown RBP15.05■□□□□ -0
CUX1-212ENST00000547394 NPATQ14207 1427 aa15.04■□□□□ -0
CUX1-212ENST00000547394 VWDEQ8N2E2 1590 aa15.04■□□□□ -0
CUX1-212ENST00000547394 COL17A1Q9UMD9 1497 aaPredicted RBP15.04■□□□□ -0
CUX1-212ENST00000547394 MADDQ8WXG6 1647 aa15.04■□□□□ -0
CUX1-212ENST00000547394 ZBED9Q6R2W3 1325 aa15.03■□□□□ -0
CUX1-212ENST00000547394 MLECQ14165 292 aa15.03■□□□□ -0
CUX1-212ENST00000547394 TRAK1Q9UPV9 953 aa15.03■□□□□ -0
CUX1-212ENST00000547394 MYBBP1AQ9BQG0 1328 aaKnown RBP15.03■□□□□ -0
CUX1-212ENST00000547394 ABCA6Q8N139 1617 aa15.02■□□□□ -0
CUX1-212ENST00000547394 NOS1P29475 1434 aa15.02□□□□□ -0.01
CUX1-212ENST00000547394 KTN1Q86UP2 1357 aaKnown RBP15.02□□□□□ -0.01
CUX1-212ENST00000547394 EFCAB6Q5THR3 1501 aa15.01□□□□□ -0.01
CUX1-212ENST00000547394 SAFB2Q14151 953 aaKnown RBP eCLIP15□□□□□ -0.01
CUX1-212ENST00000547394 HECW2Q9P2P5 1572 aa15□□□□□ -0.01
CUX1-212ENST00000547394 MLH3Q9UHC1 1453 aa15□□□□□ -0.01
CUX1-212ENST00000547394 EIF2AK4Q9P2K8 1649 aaKnown RBP15□□□□□ -0.01
CUX1-212ENST00000547394 RALBP1Q15311 655 aa14.99□□□□□ -0.01
CUX1-212ENST00000547394 FBXO31Q5XUX0 539 aaPredicted RBP14.99□□□□□ -0.01
CUX1-212ENST00000547394 TSPOAP1O95153 1857 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms