RNA–Protein interactions for RNA: ENST00000546120.2

UBC-213, Transcript of ubiquitin C, human

TSL 5 BASIC

Gene UBC, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-213	ENST00000546120	PDCL3	Q9H2J4	239 aa		13.13	□□□□□ -0.31
UBC-213	ENST00000546120	TARBP1	Q13395	1621 aa	Known RBP	13.13	□□□□□ -0.31
UBC-213	ENST00000546120	KIF14	Q15058	1648 aa		13.13	□□□□□ -0.31
UBC-213	ENST00000546120	POLA1	P09884	1462 aa	Predicted RBP	13.12	□□□□□ -0.31
UBC-213	ENST00000546120	RALGAPB	Q86X10	1494 aa		13.12	□□□□□ -0.31
UBC-213	ENST00000546120	GOLGA6L3	A6NEY3	463 aa		13.12	□□□□□ -0.31
UBC-213	ENST00000546120	ZMYND15	Q9H091	742 aa		13.12	□□□□□ -0.31
UBC-213	ENST00000546120	UPF2	Q9HAU5	1272 aa	Known RBP	13.12	□□□□□ -0.31
UBC-213	ENST00000546120	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.12	□□□□□ -0.31
UBC-213	ENST00000546120	NBPF8	Q3BBV2	869 aa		13.11	□□□□□ -0.31
UBC-213	ENST00000546120	SCAPER	Q9BY12	1400 aa		13.11	□□□□□ -0.31
UBC-213	ENST00000546120	EIF4G3	O43432	1585 aa	Known RBP	13.11	□□□□□ -0.31
UBC-213	ENST00000546120	RAD54L2	Q9Y4B4	1467 aa		13.1	□□□□□ -0.31
UBC-213	ENST00000546120	PARD3	Q8TEW0	1356 aa		13.1	□□□□□ -0.31
UBC-213	ENST00000546120	ANKRD30A	Q9BXX3	1397 aa		13.1	□□□□□ -0.31
UBC-213	ENST00000546120	BLM	P54132	1417 aa	Predicted RBP	13.1	□□□□□ -0.31
UBC-213	ENST00000546120	FSD2	A1L4K1	749 aa		13.09	□□□□□ -0.31
UBC-213	ENST00000546120	FRAT2	O75474	233 aa	Predicted RBP	13.09	□□□□□ -0.31
UBC-213	ENST00000546120	KDM5C	P41229	1560 aa		13.08	□□□□□ -0.32
UBC-213	ENST00000546120	C8orf34	Q49A92	452 aa		13.08	□□□□□ -0.32
UBC-213	ENST00000546120	VSIG10	Q8N0Z9	540 aa		13.08	□□□□□ -0.32
UBC-213	ENST00000546120	KIAA1107	Q9UPP5	1409 aa		13.07	□□□□□ -0.32
UBC-213	ENST00000546120	NCL	P19338	710 aa	Known RBP	13.07	□□□□□ -0.32
UBC-213	ENST00000546120	CALD1	Q05682	793 aa	Known RBP	13.06	□□□□□ -0.32
UBC-213	ENST00000546120	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.06	□□□□□ -0.32
UBC-213	ENST00000546120	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.06	□□□□□ -0.32
UBC-213	ENST00000546120	TDRD9	Q8NDG6	1382 aa	Known RBP	13.06	□□□□□ -0.32
UBC-213	ENST00000546120	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.05	□□□□□ -0.32
UBC-213	ENST00000546120	DCAF11	Q8TEB1	546 aa		13.05	□□□□□ -0.32
UBC-213	ENST00000546120	DDX11L8	A8MPP1	907 aa		13.04	□□□□□ -0.32
UBC-213	ENST00000546120	RRP7BP	Q9NSQ0	103 aa		13.04	□□□□□ -0.32
UBC-213	ENST00000546120	CAMSAP2	Q08AD1	1489 aa		13.04	□□□□□ -0.32
UBC-213	ENST00000546120	CHD1	O14646	1710 aa		13.03	□□□□□ -0.32
UBC-213	ENST00000546120	FBLN2	P98095	1184 aa		13.03	□□□□□ -0.32
UBC-213	ENST00000546120	CRBN	Q96SW2	442 aa		13.03	□□□□□ -0.32
UBC-213	ENST00000546120	CGNL1	Q0VF96	1302 aa		13.03	□□□□□ -0.32
UBC-213	ENST00000546120	DAPK1	P53355	1430 aa		13.03	□□□□□ -0.32
UBC-213	ENST00000546120	PDE3A	Q14432	1141 aa		13.02	□□□□□ -0.33
UBC-213	ENST00000546120	MYH16	Q9H6N6	1097 aa		13.02	□□□□□ -0.33
UBC-213	ENST00000546120	SLC24A1	O60721	1099 aa		13.01	□□□□□ -0.33
UBC-213	ENST00000546120	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.01	□□□□□ -0.33
UBC-213	ENST00000546120	CLASP1	Q7Z460	1538 aa		13.01	□□□□□ -0.33
UBC-213	ENST00000546120	DNMT1	P26358	1616 aa	Known RBP	13.01	□□□□□ -0.33
UBC-213	ENST00000546120	ADGRL2	O95490	1459 aa		13	□□□□□ -0.33
UBC-213	ENST00000546120	HS1BP3	Q53T59	392 aa		13	□□□□□ -0.33
UBC-213	ENST00000546120	TRIM44	Q96DX7	344 aa	Predicted RBP	13	□□□□□ -0.33
UBC-213	ENST00000546120		E9PCH4	1651 aa		12.99	□□□□□ -0.33
UBC-213	ENST00000546120	P3H3	Q8IVL6	736 aa		12.99	□□□□□ -0.33
UBC-213	ENST00000546120	CHMP5	Q9NZZ3	219 aa		12.99	□□□□□ -0.33
UBC-213	ENST00000546120	ESPN	B1AK53	854 aa		12.98	□□□□□ -0.33
UBC-213	ENST00000546120	ANP32B	Q92688	251 aa	Known RBP	12.98	□□□□□ -0.33
UBC-213	ENST00000546120	CARD11	Q9BXL7	1154 aa		12.98	□□□□□ -0.33
UBC-213	ENST00000546120	ANTXR1	Q9H6X2	564 aa		12.98	□□□□□ -0.33
UBC-213	ENST00000546120	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.98	□□□□□ -0.33
UBC-213	ENST00000546120	XRCC6	P12956	609 aa	Known RBP eCLIP	12.97	□□□□□ -0.33	1e-13	■□□□□ 10.4
UBC-213	ENST00000546120	PMFBP1	Q8TBY8	1022 aa		12.97	□□□□□ -0.33
UBC-213	ENST00000546120	MCM4	P33991	863 aa		12.96	□□□□□ -0.33
UBC-213	ENST00000546120	GOLGA2	Q08379	1002 aa		12.96	□□□□□ -0.33
UBC-213	ENST00000546120	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	12.96	□□□□□ -0.33
UBC-213	ENST00000546120	BCORL1	Q5H9F3	1711 aa		12.96	□□□□□ -0.34
UBC-213	ENST00000546120	ABCC5	O15440	1437 aa		12.96	□□□□□ -0.34
UBC-213	ENST00000546120	LAMC1	P11047	1609 aa		12.95	□□□□□ -0.34
UBC-213	ENST00000546120	EPRS	P07814	1512 aa	Known RBP	12.95	□□□□□ -0.34
UBC-213	ENST00000546120	NCBP3	Q53F19	620 aa	Known RBP	12.95	□□□□□ -0.34
UBC-213	ENST00000546120	PZP	P20742	1482 aa		12.95	□□□□□ -0.34
UBC-213	ENST00000546120	PBRM1	Q86U86	1689 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.94	□□□□□ -0.34
UBC-213	ENST00000546120	STAC3	Q96MF2	364 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	POGK	Q9P215	609 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	RIMBP3C	A6NJZ7	1639 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	RIMBP3B	A6NNM3	1639 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	RIMBP3	Q9UFD9	1639 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	GPRASP1	Q5JY77	1395 aa		12.94	□□□□□ -0.34
UBC-213	ENST00000546120	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.94	□□□□□ -0.34
UBC-213	ENST00000546120	PER1	O15534	1290 aa	Predicted RBP	12.93	□□□□□ -0.34
UBC-213	ENST00000546120	MCM5	P33992	734 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	CCDC173	Q0VFZ6	552 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	CDCA8	Q53HL2	280 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	TRMT2A	Q8IZ69	625 aa	Known RBP	12.93	□□□□□ -0.34
UBC-213	ENST00000546120	PODXL2	Q9NZ53	605 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	NPC1L1	Q9UHC9	1359 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	KDM5D	Q9BY66	1539 aa		12.93	□□□□□ -0.34
UBC-213	ENST00000546120	TBC1D32	Q96NH3	1257 aa		12.92	□□□□□ -0.34
UBC-213	ENST00000546120	GRPEL1	Q9HAV7	217 aa		12.92	□□□□□ -0.34
UBC-213	ENST00000546120	CHIC2	Q9UKJ5	165 aa		12.92	□□□□□ -0.34
UBC-213	ENST00000546120	ZNF521	Q96K83	1311 aa		12.91	□□□□□ -0.34
UBC-213	ENST00000546120	CSPP1	Q1MSJ5	1256 aa		12.91	□□□□□ -0.34
UBC-213	ENST00000546120	DUSP27	Q5VZP5	1158 aa		12.91	□□□□□ -0.34
UBC-213	ENST00000546120	GBP4	Q96PP9	640 aa		12.91	□□□□□ -0.34
UBC-213	ENST00000546120	KDM6B	O15054	1643 aa		12.91	□□□□□ -0.34
UBC-213	ENST00000546120	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.91	□□□□□ -0.34
UBC-213	ENST00000546120		E9PSI1	815 aa		12.9	□□□□□ -0.34
UBC-213	ENST00000546120	SLC4A3	P48751	1232 aa		12.9	□□□□□ -0.34
UBC-213	ENST00000546120	SMAP1	Q8IYB5	467 aa	Predicted RBP	12.9	□□□□□ -0.34
UBC-213	ENST00000546120	VIRMA	Q69YN4	1812 aa	Known RBP	12.9	□□□□□ -0.34
UBC-213	ENST00000546120	NUP160	Q12769	1436 aa		12.89	□□□□□ -0.35
UBC-213	ENST00000546120	TRAK2	O60296	914 aa		12.89	□□□□□ -0.35
UBC-213	ENST00000546120	OFD1	O75665	1012 aa		12.89	□□□□□ -0.35
UBC-213	ENST00000546120	SHANK2	Q9UPX8	1470 aa		12.89	□□□□□ -0.35
UBC-213	ENST00000546120	USP19	O94966	1318 aa		12.88	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms