RNA–Protein interactions for RNA: ENST00000545026.1

LEMD3-206, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-206ENST00000545026 ARSIQ5FYB1 569 aa13.07□□□□□ -0.32
LEMD3-206ENST00000545026 ERICH6Q7L0X2 663 aa13.07□□□□□ -0.32
LEMD3-206ENST00000545026 PARP9Q8IXQ6 854 aa13.07□□□□□ -0.32
LEMD3-206ENST00000545026 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.32
LEMD3-206ENST00000545026 NUDT7P0C024 238 aa13.06□□□□□ -0.32
LEMD3-206ENST00000545026 GPR153Q6NV75 609 aa13.05□□□□□ -0.32
LEMD3-206ENST00000545026 FAM117AQ9C073 453 aa13.05□□□□□ -0.32
LEMD3-206ENST00000545026 ZSWIM6Q9HCJ5 1215 aa13.04□□□□□ -0.32
LEMD3-206ENST00000545026 SCUBE2Q9NQ36 999 aa13.04□□□□□ -0.32
LEMD3-206ENST00000545026 MAMSTRQ6ZN01 415 aa13.03□□□□□ -0.32
LEMD3-206ENST00000545026 ZNF454Q8N9F8 522 aa13.03□□□□□ -0.32
LEMD3-206ENST00000545026 RIMBP2O15034 1052 aa13.02□□□□□ -0.33
LEMD3-206ENST00000545026 C6orf132Q5T0Z8 1188 aa13.02□□□□□ -0.33
LEMD3-206ENST00000545026 ZDHHC16Q969W1 377 aa13.02□□□□□ -0.33
LEMD3-206ENST00000545026 PLEKHG3A1L390 1219 aa12.99□□□□□ -0.33
LEMD3-206ENST00000545026 TTLL12Q14166 644 aaPredicted RBP12.99□□□□□ -0.33
LEMD3-206ENST00000545026 CERKQ8TCT0 537 aa12.98□□□□□ -0.33
LEMD3-206ENST00000545026 DDRGK1Q96HY6 314 aa12.98□□□□□ -0.33
LEMD3-206ENST00000545026 ADAM33Q9BZ11 813 aa12.98□□□□□ -0.33
LEMD3-206ENST00000545026 C14orf37Q86TY3 774 aa12.97□□□□□ -0.33
LEMD3-206ENST00000545026 REPIN1Q9BWE0 567 aaKnown RBP12.97□□□□□ -0.33
LEMD3-206ENST00000545026 GIGYF2Q6Y7W6 1299 aaKnown RBP12.96□□□□□ -0.33
LEMD3-206ENST00000545026 ZNF710Q8N1W2 664 aa12.96□□□□□ -0.33
LEMD3-206ENST00000545026 PHOX2BQ99453 314 aa12.96□□□□□ -0.33
LEMD3-206ENST00000545026 TMUB1Q9BVT8 246 aa12.96□□□□□ -0.33
LEMD3-206ENST00000545026 PADI6Q6TGC4 694 aa12.94□□□□□ -0.34
LEMD3-206ENST00000545026 TTC13Q8NBP0 860 aa12.94□□□□□ -0.34
LEMD3-206ENST00000545026 LHX6Q9UPM6 363 aa12.94□□□□□ -0.34
LEMD3-206ENST00000545026 FAM161AQ3B820 660 aa12.93□□□□□ -0.34
LEMD3-206ENST00000545026 RBM27Q9P2N5 1060 aaKnown RBP12.93□□□□□ -0.34
LEMD3-206ENST00000545026 MS4A1P11836 297 aa12.92□□□□□ -0.34
LEMD3-206ENST00000545026 ADGRG1Q9Y653 693 aa12.91□□□□□ -0.34
LEMD3-206ENST00000545026 OATP04181 439 aa12.9□□□□□ -0.34
LEMD3-206ENST00000545026 CLCN1P35523 988 aa12.9□□□□□ -0.34
LEMD3-206ENST00000545026 MDM2Q00987 491 aaPredicted RBP12.9□□□□□ -0.34
LEMD3-206ENST00000545026 METTL3Q86U44 580 aaKnown RBP12.9□□□□□ -0.34
LEMD3-206ENST00000545026 GPCPD1Q9NPB8 672 aa12.89□□□□□ -0.35
LEMD3-206ENST00000545026 PRSS12P56730 875 aa12.88□□□□□ -0.35
LEMD3-206ENST00000545026 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
LEMD3-206ENST00000545026 PSDA5PKW4 1024 aaPredicted RBP12.87□□□□□ -0.35
LEMD3-206ENST00000545026 SNPHO15079 494 aa12.87□□□□□ -0.35
LEMD3-206ENST00000545026 PXYLP1Q8TE99 480 aa12.87□□□□□ -0.35
LEMD3-206ENST00000545026 BCL2L12Q9HB09 334 aa12.87□□□□□ -0.35
LEMD3-206ENST00000545026 HOXB1P14653 301 aaPredicted RBP12.86□□□□□ -0.35
LEMD3-206ENST00000545026 CDCA7LQ96GN5 454 aa12.86□□□□□ -0.35
LEMD3-206ENST00000545026 COL9A1P20849 921 aa12.85□□□□□ -0.35
LEMD3-206ENST00000545026 NLRP7Q8WX94 980 aa12.84□□□□□ -0.35
LEMD3-206ENST00000545026 GOPCQ9HD26 462 aa12.84□□□□□ -0.35
LEMD3-206ENST00000545026 FAM198AQ9UFP1 575 aa12.84□□□□□ -0.35
LEMD3-206ENST00000545026 SSTR3P32745 418 aaPredicted RBP12.83□□□□□ -0.36
LEMD3-206ENST00000545026 FAM217BQ9NTX9 383 aaPredicted RBP12.81□□□□□ -0.36
LEMD3-206ENST00000545026 OTUD5Q96G74 571 aa12.8□□□□□ -0.36
LEMD3-206ENST00000545026 PPP1R3GB7ZBB8 358 aa12.79□□□□□ -0.36
LEMD3-206ENST00000545026 PTPREP23469 700 aa12.79□□□□□ -0.36
LEMD3-206ENST00000545026 RBM46Q8TBY0 533 aaKnown RBP12.79□□□□□ -0.36
LEMD3-206ENST00000545026 EYA1Q99502 592 aa12.77□□□□□ -0.37
LEMD3-206ENST00000545026 TSKSQ9UJT2 592 aa12.77□□□□□ -0.37
LEMD3-206ENST00000545026 BEGAINQ9BUH8 593 aa12.76□□□□□ -0.37
LEMD3-206ENST00000545026 SH3D19Q5HYK7 790 aa12.75□□□□□ -0.37
LEMD3-206ENST00000545026 C3orf80F5H4A9 247 aa12.74□□□□□ -0.37
LEMD3-206ENST00000545026 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.73□□□□□ -0.37
LEMD3-206ENST00000545026 RCCD1A6NED2 376 aa12.73□□□□□ -0.37
LEMD3-206ENST00000545026 PCMTD1Q96MG8 357 aaPredicted RBP12.73□□□□□ -0.37
LEMD3-206ENST00000545026 TRIM6-TRIM34B2RNG4 842 aa12.72□□□□□ -0.37
LEMD3-206ENST00000545026 RSPH6AQ9H0K4 717 aa12.71□□□□□ -0.37
LEMD3-206ENST00000545026 SKIV2LQ15477 1246 aaKnown RBP12.7□□□□□ -0.38
LEMD3-206ENST00000545026 NUDT18Q6ZVK8 323 aa12.7□□□□□ -0.38
LEMD3-206ENST00000545026 KCNK17Q96T54 332 aa12.69□□□□□ -0.38
LEMD3-206ENST00000545026 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
LEMD3-206ENST00000545026 PACS2Q86VP3 889 aa12.68□□□□□ -0.38
LEMD3-206ENST00000545026 TATDN2Q93075 761 aa12.68□□□□□ -0.38
LEMD3-206ENST00000545026 ONECUT3O60422 494 aaPredicted RBP12.67□□□□□ -0.38
LEMD3-206ENST00000545026 PROX2Q3B8N5 592 aa12.67□□□□□ -0.38
LEMD3-206ENST00000545026 PNMA3Q9UL41 463 aa12.67□□□□□ -0.38
LEMD3-206ENST00000545026 DNAJB2P25686 324 aa12.65□□□□□ -0.38
LEMD3-206ENST00000545026 LHX8Q68G74 356 aa12.65□□□□□ -0.38
LEMD3-206ENST00000545026 MYSM1Q5VVJ2 828 aa12.64□□□□□ -0.39
LEMD3-206ENST00000545026 ZBED2Q9BTP6 218 aa12.64□□□□□ -0.39
LEMD3-206ENST00000545026 ZMYND15Q9H091 742 aa12.64□□□□□ -0.39
LEMD3-206ENST00000545026 POLR3EQ9NVU0 708 aa12.64□□□□□ -0.39
LEMD3-206ENST00000545026 PROCA1Q8NCQ7 364 aaPredicted RBP12.63□□□□□ -0.39
LEMD3-206ENST00000545026 TBC1D2Q9BYX2 928 aa12.63□□□□□ -0.39
LEMD3-206ENST00000545026 TMEM134Q9H6X4 195 aa12.63□□□□□ -0.39
LEMD3-206ENST00000545026 SMAPO00193 183 aa12.62□□□□□ -0.39
LEMD3-206ENST00000545026 CD46P15529 392 aa12.62□□□□□ -0.39
LEMD3-206ENST00000545026 PSEN2P49810 448 aa12.62□□□□□ -0.39
LEMD3-206ENST00000545026 KCNH8Q96L42 1107 aa12.62□□□□□ -0.39
LEMD3-206ENST00000545026 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
LEMD3-206ENST00000545026 FLIIQ13045 1269 aa12.61□□□□□ -0.39
LEMD3-206ENST00000545026 POTEEQ6S8J3 1075 aa12.61□□□□□ -0.39
LEMD3-206ENST00000545026 KIAA1468Q9P260 1216 aa12.61□□□□□ -0.39
LEMD3-206ENST00000545026 VARS2Q5ST30 1063 aaKnown RBP12.6□□□□□ -0.39
LEMD3-206ENST00000545026 ERBB3P21860 1342 aa12.6□□□□□ -0.39
LEMD3-206ENST00000545026 DIXDC1Q155Q3 683 aa12.59□□□□□ -0.39
LEMD3-206ENST00000545026 SULF1Q8IWU6 871 aa12.59□□□□□ -0.39
LEMD3-206ENST00000545026 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.59□□□□□ -0.39
LEMD3-206ENST00000545026 DDX11L8A8MPP1 907 aa12.58□□□□□ -0.4
LEMD3-206ENST00000545026 ARHGAP33O14559 1287 aa12.58□□□□□ -0.4
LEMD3-206ENST00000545026 ST18O60284 1047 aa12.58□□□□□ -0.4
LEMD3-206ENST00000545026 SPIRE2Q8WWL2 714 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms