RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	FAM205C	A6NFA0	338 aa		12.14	□□□□□ -0.47
LEMD3-205	ENST00000544506	BCL2L12	Q9HB09	334 aa		12.14	□□□□□ -0.47
LEMD3-205	ENST00000544506	ZMYND10	O75800	440 aa		12.13	□□□□□ -0.47
LEMD3-205	ENST00000544506	FCHSD2	O94868	740 aa		12.13	□□□□□ -0.47
LEMD3-205	ENST00000544506	PTGDR	Q13258	359 aa		12.13	□□□□□ -0.47
LEMD3-205	ENST00000544506	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.12	□□□□□ -0.47
LEMD3-205	ENST00000544506	HS3ST6	Q96QI5	342 aa		12.1	□□□□□ -0.47
LEMD3-205	ENST00000544506	POTEB3	A0JP26	581 aa		12.09	□□□□□ -0.47
LEMD3-205	ENST00000544506	PTPRE	P23469	700 aa		12.09	□□□□□ -0.47
LEMD3-205	ENST00000544506	HIC1	Q14526	733 aa		12.09	□□□□□ -0.47
LEMD3-205	ENST00000544506	POTEB	Q6S5H4	581 aa		12.09	□□□□□ -0.47
LEMD3-205	ENST00000544506	BARGIN	Q6ZT62	677 aa		12.08	□□□□□ -0.48
LEMD3-205	ENST00000544506	GNPAT	O15228	680 aa		12.07	□□□□□ -0.48
LEMD3-205	ENST00000544506	COL9A1	P20849	921 aa		12.07	□□□□□ -0.48
LEMD3-205	ENST00000544506	KCNK17	Q96T54	332 aa		12.07	□□□□□ -0.48
LEMD3-205	ENST00000544506	PPP1R3G	B7ZBB8	358 aa		12.05	□□□□□ -0.48
LEMD3-205	ENST00000544506	FECH	P22830	423 aa		12.05	□□□□□ -0.48
LEMD3-205	ENST00000544506	POTEE	Q6S8J3	1075 aa		12.05	□□□□□ -0.48
LEMD3-205	ENST00000544506	ZNF687	Q8N1G0	1237 aa		12.05	□□□□□ -0.48
LEMD3-205	ENST00000544506	CERK	Q8TCT0	537 aa		12.05	□□□□□ -0.48
LEMD3-205	ENST00000544506	PSEN2	P49810	448 aa		12.03	□□□□□ -0.48
LEMD3-205	ENST00000544506	SLC24A3	Q9HC58	644 aa		12.03	□□□□□ -0.48
LEMD3-205	ENST00000544506	KCNH8	Q96L42	1107 aa		12.02	□□□□□ -0.49
LEMD3-205	ENST00000544506	AXIN2	Q9Y2T1	843 aa		12.02	□□□□□ -0.49
LEMD3-205	ENST00000544506	ARHGAP33	O14559	1287 aa		12.01	□□□□□ -0.49
LEMD3-205	ENST00000544506	MAP2K5	Q13163	448 aa		12.01	□□□□□ -0.49
LEMD3-205	ENST00000544506	PADI6	Q6TGC4	694 aa		12.01	□□□□□ -0.49
LEMD3-205	ENST00000544506	KRI1	Q8N9T8	703 aa	Known RBP	12.01	□□□□□ -0.49
LEMD3-205	ENST00000544506	PBX2	P40425	430 aa		12	□□□□□ -0.49
LEMD3-205	ENST00000544506	PRSS12	P56730	875 aa		11.99	□□□□□ -0.49
LEMD3-205	ENST00000544506	CDCA7L	Q96GN5	454 aa		11.99	□□□□□ -0.49
LEMD3-205	ENST00000544506	RBM27	Q9P2N5	1060 aa	Known RBP	11.99	□□□□□ -0.49
LEMD3-205	ENST00000544506	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.97	□□□□□ -0.49
LEMD3-205	ENST00000544506	DMRTA1	Q5VZB9	504 aa		11.97	□□□□□ -0.49
LEMD3-205	ENST00000544506	TTC13	Q8NBP0	860 aa		11.97	□□□□□ -0.49
LEMD3-205	ENST00000544506	PROX2	Q3B8N5	592 aa		11.96	□□□□□ -0.49
LEMD3-205	ENST00000544506	CCDC102A	Q96A19	550 aa		11.96	□□□□□ -0.49
LEMD3-205	ENST00000544506	ZBED2	Q9BTP6	218 aa		11.96	□□□□□ -0.49
LEMD3-205	ENST00000544506	IRF6	O14896	467 aa		11.95	□□□□□ -0.5
LEMD3-205	ENST00000544506	FAM198A	Q9UFP1	575 aa		11.95	□□□□□ -0.5
LEMD3-205	ENST00000544506	TSKS	Q9UJT2	592 aa		11.95	□□□□□ -0.5
LEMD3-205	ENST00000544506	TRIM6-TRIM34	B2RNG4	842 aa		11.94	□□□□□ -0.5
LEMD3-205	ENST00000544506	AK7	Q96M32	723 aa		11.94	□□□□□ -0.5
LEMD3-205	ENST00000544506	FAM161A	Q3B820	660 aa		11.92	□□□□□ -0.5
LEMD3-205	ENST00000544506	POTEG	Q6S5H5	508 aa		11.92	□□□□□ -0.5
LEMD3-205	ENST00000544506	ADGRG1	Q9Y653	693 aa		11.91	□□□□□ -0.5
LEMD3-205	ENST00000544506	POTEM	A6NI47	508 aa		11.9	□□□□□ -0.5
LEMD3-205	ENST00000544506	SLC4A5	Q9BY07	1137 aa		11.9	□□□□□ -0.5
LEMD3-205	ENST00000544506	LSM11	P83369	360 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
LEMD3-205	ENST00000544506	C3orf80	F5H4A9	247 aa		11.88	□□□□□ -0.51
LEMD3-205	ENST00000544506	TRIM66	O15016	1216 aa		11.88	□□□□□ -0.51
LEMD3-205	ENST00000544506	ONECUT3	O60422	494 aa	Predicted RBP	11.88	□□□□□ -0.51
LEMD3-205	ENST00000544506	VPS9D1	Q9Y2B5	631 aa		11.88	□□□□□ -0.51
LEMD3-205	ENST00000544506	NBPF26	B4DH59	902 aa		11.87	□□□□□ -0.51
LEMD3-205	ENST00000544506	PACS2	Q86VP3	889 aa		11.87	□□□□□ -0.51
LEMD3-205	ENST00000544506	KIAA1468	Q9P260	1216 aa		11.86	□□□□□ -0.51
LEMD3-205	ENST00000544506	OAT	P04181	439 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	NUDT18	Q6ZVK8	323 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	METTL3	Q86U44	580 aa	Known RBP	11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	PXYLP1	Q8TE99	480 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	KRTAP3-3	Q9BYR6	98 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	KRTAP3-2	Q9BYR7	98 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	RABGEF1	Q9UJ41	708 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	PNMA3	Q9UL41	463 aa		11.85	□□□□□ -0.51
LEMD3-205	ENST00000544506	TK2	O00142	265 aa		11.84	□□□□□ -0.51
LEMD3-205	ENST00000544506	RBM46	Q8TBY0	533 aa	Known RBP	11.84	□□□□□ -0.51
LEMD3-205	ENST00000544506	TATDN2	Q93075	761 aa		11.84	□□□□□ -0.51
LEMD3-205	ENST00000544506	PHOX2B	Q99453	314 aa		11.84	□□□□□ -0.51
LEMD3-205	ENST00000544506	SMAP	O00193	183 aa		11.83	□□□□□ -0.52
LEMD3-205	ENST00000544506	ADGRD1	Q6QNK2	874 aa		11.83	□□□□□ -0.52
LEMD3-205	ENST00000544506	PDE4D	Q08499	809 aa		11.82	□□□□□ -0.52
LEMD3-205	ENST00000544506	EYA1	Q99502	592 aa		11.82	□□□□□ -0.52
LEMD3-205	ENST00000544506	AMHR2	Q16671	573 aa		11.81	□□□□□ -0.52
LEMD3-205	ENST00000544506	ANKRD13D	Q6ZTN6	518 aa		11.81	□□□□□ -0.52
LEMD3-205	ENST00000544506	CDAN1	Q8IWY9	1227 aa		11.81	□□□□□ -0.52
LEMD3-205	ENST00000544506	BRPF1	P55201	1214 aa	Predicted RBP	11.8	□□□□□ -0.52
LEMD3-205	ENST00000544506	NLRP7	Q8WX94	980 aa		11.8	□□□□□ -0.52
LEMD3-205	ENST00000544506	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.8	□□□□□ -0.52
LEMD3-205	ENST00000544506	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.78	□□□□□ -0.52
LEMD3-205	ENST00000544506	NEUROD2	Q15784	382 aa		11.78	□□□□□ -0.52
LEMD3-205	ENST00000544506	NBPF3	Q9H094	633 aa		11.78	□□□□□ -0.52
LEMD3-205	ENST00000544506	RCCD1	A6NED2	376 aa		11.77	□□□□□ -0.53
LEMD3-205	ENST00000544506	HR	O43593	1189 aa		11.77	□□□□□ -0.53
LEMD3-205	ENST00000544506	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.76	□□□□□ -0.53
LEMD3-205	ENST00000544506	MDM2	Q00987	491 aa	Predicted RBP	11.76	□□□□□ -0.53
LEMD3-205	ENST00000544506	TTLL12	Q14166	644 aa	Predicted RBP	11.76	□□□□□ -0.53
LEMD3-205	ENST00000544506	PARP9	Q8IXQ6	854 aa		11.76	□□□□□ -0.53
LEMD3-205	ENST00000544506	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.76	□□□□□ -0.53
LEMD3-205	ENST00000544506	DNAJB2	P25686	324 aa		11.75	□□□□□ -0.53
LEMD3-205	ENST00000544506	FAM98C	Q17RN3	349 aa	Known RBP	11.74	□□□□□ -0.53
LEMD3-205	ENST00000544506	REPIN1	Q9BWE0	567 aa	Known RBP	11.74	□□□□□ -0.53
LEMD3-205	ENST00000544506	CLCN1	P35523	988 aa		11.73	□□□□□ -0.53
LEMD3-205	ENST00000544506	LAPTM4B	Q86VI4	370 aa		11.73	□□□□□ -0.53
LEMD3-205	ENST00000544506	MRPL50	Q8N5N7	158 aa	Known RBP	11.73	□□□□□ -0.53
LEMD3-205	ENST00000544506	TMUB1	Q9BVT8	246 aa		11.73	□□□□□ -0.53
LEMD3-205	ENST00000544506	GPCPD1	Q9NPB8	672 aa		11.73	□□□□□ -0.53
LEMD3-205	ENST00000544506	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.71	□□□□□ -0.53
LEMD3-205	ENST00000544506	KDM4C	Q9H3R0	1056 aa		11.71	□□□□□ -0.53
LEMD3-205	ENST00000544506	TMEM134	Q9H6X4	195 aa		11.71	□□□□□ -0.53
LEMD3-205	ENST00000544506	ZFR	Q96KR1	1074 aa	Known RBP	11.68	□□□□□ -0.54

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