RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 RBM33Q96EV2 1170 aaKnown RBP5.45□□□□□ -1.54
YBX3-214ENST00000544501 GPR37O15354 613 aa5.44□□□□□ -1.54
YBX3-214ENST00000544501 PTPREP23469 700 aa5.44□□□□□ -1.54
YBX3-214ENST00000544501 PBX2P40425 430 aa5.44□□□□□ -1.54
YBX3-214ENST00000544501 HIC1Q14526 733 aa5.44□□□□□ -1.54
YBX3-214ENST00000544501 TSR1Q2NL82 804 aaKnown RBP5.44□□□□□ -1.54
YBX3-214ENST00000544501 FAM205CA6NFA0 338 aa5.43□□□□□ -1.54
YBX3-214ENST00000544501 ZNF687Q8N1G0 1237 aa5.43□□□□□ -1.54
YBX3-214ENST00000544501 KCNH8Q96L42 1107 aa5.43□□□□□ -1.54
YBX3-214ENST00000544501 NPDC1Q9NQX5 325 aaPredicted RBP5.43□□□□□ -1.54
YBX3-214ENST00000544501 PPP1R3GB7ZBB8 358 aa5.42□□□□□ -1.54
YBX3-214ENST00000544501 ARHGAP33O14559 1287 aa5.42□□□□□ -1.54
YBX3-214ENST00000544501 GNPATO15228 680 aa5.42□□□□□ -1.54
YBX3-214ENST00000544501 BARGINQ6ZT62 677 aa5.42□□□□□ -1.54
YBX3-214ENST00000544501 HS3ST6Q96QI5 342 aa5.42□□□□□ -1.54
YBX3-214ENST00000544501 RBM27Q9P2N5 1060 aaKnown RBP5.42□□□□□ -1.54
YBX3-214ENST00000544501 CDHR5Q9HBB8 845 aa5.41□□□□□ -1.54
YBX3-214ENST00000544501 ONECUT3O60422 494 aaPredicted RBP5.4□□□□□ -1.54
YBX3-214ENST00000544501 PRKCSHP14314 528 aaPredicted RBP5.4□□□□□ -1.54
YBX3-214ENST00000544501 PRSS12P56730 875 aa5.4□□□□□ -1.54
YBX3-214ENST00000544501 KCNK17Q96T54 332 aa5.4□□□□□ -1.54
YBX3-214ENST00000544501 SLC4A5Q9BY07 1137 aa5.4□□□□□ -1.54
YBX3-214ENST00000544501 MINK1Q8N4C8 1332 aaPredicted RBP5.4□□□□□ -1.55
YBX3-214ENST00000544501 POTEB3A0JP26 581 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 COL9A1P20849 921 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 MAP2K5Q13163 448 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 POTEBQ6S5H4 581 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 TTC13Q8NBP0 860 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 CDCA7LQ96GN5 454 aa5.39□□□□□ -1.55
YBX3-214ENST00000544501 IRF6O14896 467 aa5.38□□□□□ -1.55
YBX3-214ENST00000544501 POTEEQ6S8J3 1075 aa5.38□□□□□ -1.55
YBX3-214ENST00000544501 KRI1Q8N9T8 703 aaKnown RBP5.38□□□□□ -1.55
YBX3-214ENST00000544501 PSEN2P49810 448 aa5.37□□□□□ -1.55
YBX3-214ENST00000544501 AK7Q96M32 723 aa5.37□□□□□ -1.55
YBX3-214ENST00000544501 ZBED2Q9BTP6 218 aa5.37□□□□□ -1.55
YBX3-214ENST00000544501 TRIM6-TRIM34B2RNG4 842 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 TK2O00142 265 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 OATP04181 439 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 FECHP22830 423 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 PADI6Q6TGC4 694 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 PACS2Q86VP3 889 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 SLC24A3Q9HC58 644 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 AXIN2Q9Y2T1 843 aa5.36□□□□□ -1.55
YBX3-214ENST00000544501 DMRTA1Q5VZB9 504 aa5.35□□□□□ -1.55
YBX3-214ENST00000544501 POTEGQ6S5H5 508 aa5.35□□□□□ -1.55
YBX3-214ENST00000544501 POTEMA6NI47 508 aa5.34□□□□□ -1.55
YBX3-214ENST00000544501 LSM11P83369 360 aaKnown RBP eCLIP5.34□□□□□ -1.55
YBX3-214ENST00000544501 RABGEF1Q9UJ41 708 aa5.34□□□□□ -1.55
YBX3-214ENST00000544501 TSKSQ9UJT2 592 aa5.34□□□□□ -1.55
YBX3-214ENST00000544501 VPS9D1Q9Y2B5 631 aa5.34□□□□□ -1.55
YBX3-214ENST00000544501 ADGRG1Q9Y653 693 aa5.34□□□□□ -1.55
YBX3-214ENST00000544501 NBPF26B4DH59 902 aa5.33□□□□□ -1.56
YBX3-214ENST00000544501 PROX2Q3B8N5 592 aa5.33□□□□□ -1.56
YBX3-214ENST00000544501 RBM46Q8TBY0 533 aaKnown RBP5.33□□□□□ -1.56
YBX3-214ENST00000544501 CCDC102AQ96A19 550 aa5.33□□□□□ -1.56
YBX3-214ENST00000544501 FAM198AQ9UFP1 575 aa5.33□□□□□ -1.56
YBX3-214ENST00000544501 TRIM66O15016 1216 aa5.32□□□□□ -1.56
YBX3-214ENST00000544501 METTL3Q86U44 580 aaKnown RBP5.32□□□□□ -1.56
YBX3-214ENST00000544501 TATDN2Q93075 761 aa5.32□□□□□ -1.56
YBX3-214ENST00000544501 EYA1Q99502 592 aa5.32□□□□□ -1.56
YBX3-214ENST00000544501 KIAA1468Q9P260 1216 aa5.32□□□□□ -1.56
YBX3-214ENST00000544501 BHMG1C9JSJ3 638 aaPredicted RBP5.31□□□□□ -1.56
YBX3-214ENST00000544501 AMHR2Q16671 573 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 ADGRD1Q6QNK2 874 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 NUDT18Q6ZVK8 323 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 LAPTM4BQ86VI4 370 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 CDAN1Q8IWY9 1227 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 PXYLP1Q8TE99 480 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 NBPF3Q9H094 633 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 PCDH10Q9P2E7 1040 aa5.31□□□□□ -1.56
YBX3-214ENST00000544501 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.3□□□□□ -1.56
YBX3-214ENST00000544501 KRTAP3-3Q9BYR6 98 aa5.3□□□□□ -1.56
YBX3-214ENST00000544501 KRTAP3-2Q9BYR7 98 aa5.3□□□□□ -1.56
YBX3-214ENST00000544501 PNMA3Q9UL41 463 aa5.3□□□□□ -1.56
YBX3-214ENST00000544501 HRO43593 1189 aa5.29□□□□□ -1.56
YBX3-214ENST00000544501 PDE4DQ08499 809 aa5.29□□□□□ -1.56
YBX3-214ENST00000544501 FAM98CQ17RN3 349 aaKnown RBP5.29□□□□□ -1.56
YBX3-214ENST00000544501 FAM161AQ3B820 660 aa5.29□□□□□ -1.56
YBX3-214ENST00000544501 ANKRD13DQ6ZTN6 518 aa5.29□□□□□ -1.56
YBX3-214ENST00000544501 RCCD1A6NED2 376 aa5.28□□□□□ -1.56
YBX3-214ENST00000544501 C3orf80F5H4A9 247 aa5.28□□□□□ -1.56
YBX3-214ENST00000544501 DNAJB2P25686 324 aa5.28□□□□□ -1.56
YBX3-214ENST00000544501 CLCN1P35523 988 aa5.28□□□□□ -1.56
YBX3-214ENST00000544501 MRPL50Q8N5N7 158 aaKnown RBP5.28□□□□□ -1.56
YBX3-214ENST00000544501 PHOX2BQ99453 314 aa5.28□□□□□ -1.56
YBX3-214ENST00000544501 STAC3Q96MF2 364 aa5.27□□□□□ -1.57
YBX3-214ENST00000544501 TMEM134Q9H6X4 195 aa5.27□□□□□ -1.57
YBX3-214ENST00000544501 GPCPD1Q9NPB8 672 aa5.27□□□□□ -1.57
YBX3-214ENST00000544501 DAXXQ9UER7 740 aaPredicted RBP5.27□□□□□ -1.57
YBX3-214ENST00000544501 SMAPO00193 183 aa5.26□□□□□ -1.57
YBX3-214ENST00000544501 HDGFP51858 240 aaKnown RBP5.26□□□□□ -1.57
YBX3-214ENST00000544501 BRPF1P55201 1214 aaPredicted RBP5.26□□□□□ -1.57
YBX3-214ENST00000544501 TMUB1Q9BVT8 246 aa5.26□□□□□ -1.57
YBX3-214ENST00000544501 SEPT9Q9UHD8 586 aaPredicted RBP5.26□□□□□ -1.57
YBX3-214ENST00000544501 MDM2Q00987 491 aaPredicted RBP5.25□□□□□ -1.57
YBX3-214ENST00000544501 TTLL12Q14166 644 aaPredicted RBP5.25□□□□□ -1.57
YBX3-214ENST00000544501 PARP9Q8IXQ6 854 aa5.25□□□□□ -1.57
YBX3-214ENST00000544501 SLC4A3P48751 1232 aa5.24□□□□□ -1.57
YBX3-214ENST00000544501 NEUROD2Q15784 382 aa5.24□□□□□ -1.57
YBX3-214ENST00000544501 SULF1Q8IWU6 871 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms