RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 KCNK17Q96T54 332 aa7.62□□□□□ -1.19
USP28-210ENST00000542033 ADAM33Q9BZ11 813 aa7.62□□□□□ -1.19
USP28-210ENST00000542033 TESPA1A2RU30 521 aaPredicted RBP7.61□□□□□ -1.19
USP28-210ENST00000542033 MAP3K7O43318 606 aa7.61□□□□□ -1.19
USP28-210ENST00000542033 RBM33Q96EV2 1170 aaKnown RBP7.61□□□□□ -1.19
USP28-210ENST00000542033 MLLT3P42568 568 aaPredicted RBP7.6□□□□□ -1.19
USP28-210ENST00000542033 PPP1R3GB7ZBB8 358 aa7.59□□□□□ -1.19
USP28-210ENST00000542033 OSBPP22059 807 aa7.59□□□□□ -1.19
USP28-210ENST00000542033 LSM11P83369 360 aaKnown RBP eCLIP7.59□□□□□ -1.196e-18■■■■■ 77.1
USP28-210ENST00000542033 C6orf132Q5T0Z8 1188 aa7.59□□□□□ -1.19
USP28-210ENST00000542033 AXIN2Q9Y2T1 843 aa7.59□□□□□ -1.19
USP28-210ENST00000542033 PSEN2P49810 448 aa7.58□□□□□ -1.2
USP28-210ENST00000542033 POTEEQ6S8J3 1075 aa7.57□□□□□ -1.2
USP28-210ENST00000542033 CERKQ8TCT0 537 aa7.57□□□□□ -1.2
USP28-210ENST00000542033 TK2O00142 265 aa7.56□□□□□ -1.2
USP28-210ENST00000542033 ANKRD13DQ6ZTN6 518 aa7.56□□□□□ -1.2
USP28-210ENST00000542033 SLC4A5Q9BY07 1137 aa7.56□□□□□ -1.2
USP28-210ENST00000542033 TSR1Q2NL82 804 aaKnown RBP7.54□□□□□ -1.2
USP28-210ENST00000542033 DMRTA1Q5VZB9 504 aa7.54□□□□□ -1.2
USP28-210ENST00000542033 ADGRD1Q6QNK2 874 aa7.53□□□□□ -1.2
USP28-210ENST00000542033 RNF166Q96A37 237 aaPredicted RBP7.53□□□□□ -1.2
USP28-210ENST00000542033 STAC3Q96MF2 364 aa7.53□□□□□ -1.2
USP28-210ENST00000542033 ZBED2Q9BTP6 218 aa7.53□□□□□ -1.2
USP28-210ENST00000542033 NUTM2FA1L443 756 aa7.52□□□□□ -1.21
USP28-210ENST00000542033 ONECUT3O60422 494 aaPredicted RBP7.52□□□□□ -1.21
USP28-210ENST00000542033 COL9A1P20849 921 aa7.52□□□□□ -1.21
USP28-210ENST00000542033 PRIM1P49642 420 aaKnown RBP7.52□□□□□ -1.21
USP28-210ENST00000542033 VPS9D1Q9Y2B5 631 aa7.52□□□□□ -1.21
USP28-210ENST00000542033 NBPF3Q9H094 633 aa7.5□□□□□ -1.21
USP28-210ENST00000542033 CDHR5Q9HBB8 845 aa7.5□□□□□ -1.21
USP28-210ENST00000542033 RBM27Q9P2N5 1060 aaKnown RBP7.5□□□□□ -1.21
USP28-210ENST00000542033 TRIM6-TRIM34B2RNG4 842 aa7.49□□□□□ -1.21
USP28-210ENST00000542033 FCHSD2O94868 740 aa7.49□□□□□ -1.21
USP28-210ENST00000542033 RBM26Q5T8P6 1007 aaKnown RBP7.49□□□□□ -1.21
USP28-210ENST00000542033 GPIHBP1Q8IV16 184 aa7.49□□□□□ -1.21
USP28-210ENST00000542033 RABGEF1Q9UJ41 708 aa7.49□□□□□ -1.21
USP28-210ENST00000542033 MYT1LQ9UL68 1186 aa7.49□□□□□ -1.21
USP28-210ENST00000542033 PRSS12P56730 875 aa7.48□□□□□ -1.21
USP28-210ENST00000542033 PROX2Q3B8N5 592 aa7.48□□□□□ -1.21
USP28-210ENST00000542033 PACS2Q86VP3 889 aa7.48□□□□□ -1.21
USP28-210ENST00000542033 CDCA7LQ96GN5 454 aa7.48□□□□□ -1.21
USP28-210ENST00000542033 PTGDRQ13258 359 aa7.47□□□□□ -1.21
USP28-210ENST00000542033 HRO43593 1189 aa7.46□□□□□ -1.22
USP28-210ENST00000542033 HIC1Q14526 733 aa7.46□□□□□ -1.22
USP28-210ENST00000542033 LMOD2Q6P5Q4 547 aa7.46□□□□□ -1.22
USP28-210ENST00000542033 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.46□□□□□ -1.22
USP28-210ENST00000542033 MRPL50Q8N5N7 158 aaKnown RBP7.46□□□□□ -1.22
USP28-210ENST00000542033 NPDC1Q9NQX5 325 aaPredicted RBP7.46□□□□□ -1.22
USP28-210ENST00000542033 GOLGA8CPA6NN73 597 aa7.45□□□□□ -1.22
USP28-210ENST00000542033 NBPF26B4DH59 902 aa7.45□□□□□ -1.22
USP28-210ENST00000542033 KIAA1468Q9P260 1216 aa7.45□□□□□ -1.22
USP28-210ENST00000542033 BHMG1C9JSJ3 638 aaPredicted RBP7.44□□□□□ -1.22
USP28-210ENST00000542033 LAPTM4BQ86VI4 370 aa7.44□□□□□ -1.22
USP28-210ENST00000542033 TSKSQ9UJT2 592 aa7.44□□□□□ -1.22
USP28-210ENST00000542033 PADI6Q6TGC4 694 aa7.43□□□□□ -1.22
USP28-210ENST00000542033 GNPATO15228 680 aa7.42□□□□□ -1.22
USP28-210ENST00000542033 TTC13Q8NBP0 860 aa7.42□□□□□ -1.22
USP28-210ENST00000542033 FAM98CQ17RN3 349 aaKnown RBP7.41□□□□□ -1.22
USP28-210ENST00000542033 PNMA3Q9UL41 463 aa7.41□□□□□ -1.22
USP28-210ENST00000542033 GPR37O15354 613 aa7.4□□□□□ -1.22
USP28-210ENST00000542033 TATDN2Q93075 761 aa7.4□□□□□ -1.22
USP28-210ENST00000542033 TPRNQ4KMQ1 711 aa7.39□□□□□ -1.23
USP28-210ENST00000542033 RBM46Q8TBY0 533 aaKnown RBP7.39□□□□□ -1.23
USP28-210ENST00000542033 FAM198AQ9UFP1 575 aa7.39□□□□□ -1.23
USP28-210ENST00000542033 SEPT9Q9UHD8 586 aaPredicted RBP7.39□□□□□ -1.23
USP28-210ENST00000542033 NUDT18Q6ZVK8 323 aa7.38□□□□□ -1.23
USP28-210ENST00000542033 ANKK1Q8NFD2 765 aa7.38□□□□□ -1.23
USP28-210ENST00000542033 WNT2BQ93097 391 aa7.38□□□□□ -1.23
USP28-210ENST00000542033 OATP04181 439 aa7.37□□□□□ -1.23
USP28-210ENST00000542033 HDGFP51858 240 aaKnown RBP7.37□□□□□ -1.23
USP28-210ENST00000542033 KCTD12Q96CX2 325 aaKnown RBP7.37□□□□□ -1.23
USP28-210ENST00000542033 ZFRQ96KR1 1074 aaKnown RBP7.37□□□□□ -1.23
USP28-210ENST00000542033 SMAPO00193 183 aa7.36□□□□□ -1.23
USP28-210ENST00000542033 ADGRG1Q9Y653 693 aa7.36□□□□□ -1.23
USP28-210ENST00000542033 SLC4A3P48751 1232 aa7.35□□□□□ -1.23
USP28-210ENST00000542033 MAP2K5Q13163 448 aa7.35□□□□□ -1.23
USP28-210ENST00000542033 ZC3H15Q8WU90 426 aaKnown RBP7.34□□□□□ -1.23
USP28-210ENST00000542033 LRCH3Q96II8 777 aa7.34□□□□□ -1.23
USP28-210ENST00000542033 EYA1Q99502 592 aa7.34□□□□□ -1.23
USP28-210ENST00000542033 MINK1Q8N4C8 1332 aaPredicted RBP7.33□□□□□ -1.24
USP28-210ENST00000542033 FECHP22830 423 aa7.33□□□□□ -1.24
USP28-210ENST00000542033 DNAJB2P25686 324 aa7.33□□□□□ -1.24
USP28-210ENST00000542033 THSD4Q6ZMP0 1018 aa7.33□□□□□ -1.24
USP28-210ENST00000542033 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.33□□□□□ -1.24
USP28-210ENST00000542033 HCSTQ9UBK5 93 aa7.33□□□□□ -1.24
USP28-210ENST00000542033 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.32□□□□□ -1.24
USP28-210ENST00000542033 SOWAHBA6NEL2 793 aa7.32□□□□□ -1.24
USP28-210ENST00000542033 PRKCSHP14314 528 aaPredicted RBP7.32□□□□□ -1.24
USP28-210ENST00000542033 KRI1Q8N9T8 703 aaKnown RBP7.32□□□□□ -1.24
USP28-210ENST00000542033 NECTIN2Q92692 538 aa7.32□□□□□ -1.24
USP28-210ENST00000542033 C3orf80F5H4A9 247 aa7.31□□□□□ -1.24
USP28-210ENST00000542033 ZMYND10O75800 440 aa7.31□□□□□ -1.24
USP28-210ENST00000542033 BARGINQ6ZT62 677 aa7.31□□□□□ -1.24
USP28-210ENST00000542033 SAMD7Q7Z3H4 446 aa7.31□□□□□ -1.24
USP28-210ENST00000542033 METTL3Q86U44 580 aaKnown RBP7.31□□□□□ -1.24
USP28-210ENST00000542033 PXYLP1Q8TE99 480 aa7.31□□□□□ -1.24
USP28-210ENST00000542033 RCCD1A6NED2 376 aa7.3□□□□□ -1.24
USP28-210ENST00000542033 IRF6O14896 467 aa7.3□□□□□ -1.24
USP28-210ENST00000542033 FAM161AQ3B820 660 aa7.3□□□□□ -1.24
USP28-210ENST00000542033 SLF2Q8IX21 1173 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms