RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ZBTB47Q9UFB7 747 aaPredicted RBP18.94■□□□□ 0.62
LIG1-203ENST00000536218 ANP32AP39687 249 aaKnown RBP18.93■□□□□ 0.62
LIG1-203ENST00000536218 CLASP1Q7Z460 1538 aa18.93■□□□□ 0.62
LIG1-203ENST00000536218 RGL3Q3MIN7 710 aa18.91■□□□□ 0.62
LIG1-203ENST00000536218 PREX2Q70Z35 1606 aa18.91■□□□□ 0.62
LIG1-203ENST00000536218 DCAF11Q8TEB1 546 aa18.9■□□□□ 0.62
LIG1-203ENST00000536218 AFAP1Q8N556 730 aa18.9■□□□□ 0.62
LIG1-203ENST00000536218 ARHGEF5Q12774 1597 aa18.88■□□□□ 0.61
LIG1-203ENST00000536218 IPO9Q96P70 1041 aaKnown RBP18.87■□□□□ 0.61
LIG1-203ENST00000536218 ZCCHC11Q5TAX3 1644 aaKnown RBP18.86■□□□□ 0.61
LIG1-203ENST00000536218 PLCH2O75038 1416 aa18.86■□□□□ 0.61
LIG1-203ENST00000536218 ARHGEF12Q9NZN5 1544 aa18.85■□□□□ 0.61
LIG1-203ENST00000536218 PLEKHH2Q8IVE3 1493 aa18.84■□□□□ 0.61
LIG1-203ENST00000536218 PKNOX2Q96KN3 472 aa18.84■□□□□ 0.61
LIG1-203ENST00000536218 CCDC7Q96M83 1385 aa18.84■□□□□ 0.61
LIG1-203ENST00000536218 OSCARQ8IYS5 282 aa18.84■□□□□ 0.61
LIG1-203ENST00000536218 KIF7Q2M1P5 1343 aa18.83■□□□□ 0.6
LIG1-203ENST00000536218 CARD11Q9BXL7 1154 aa18.83■□□□□ 0.6
LIG1-203ENST00000536218 LAS1LQ9Y4W2 734 aaKnown RBP18.83■□□□□ 0.6
LIG1-203ENST00000536218 TRAPPC8Q9Y2L5 1435 aa18.82■□□□□ 0.6
LIG1-203ENST00000536218 MYO5CQ9NQX4 1742 aa18.81■□□□□ 0.6
LIG1-203ENST00000536218 SPAG9O60271 1321 aaKnown RBP18.81■□□□□ 0.6
LIG1-203ENST00000536218 UHRF1BP1LA0JNW5 1464 aa18.81■□□□□ 0.6
LIG1-203ENST00000536218 NEFMP07197 916 aa18.81■□□□□ 0.6
LIG1-203ENST00000536218 USP47Q96K76 1375 aa18.8■□□□□ 0.6
LIG1-203ENST00000536218 BRPF3Q9ULD4 1205 aa18.8■□□□□ 0.6
LIG1-203ENST00000536218 FAM135AQ9P2D6 1515 aa18.79■□□□□ 0.6
LIG1-203ENST00000536218 NPM2Q86SE8 214 aaKnown RBP18.79■□□□□ 0.6
LIG1-203ENST00000536218 NPM1P06748 294 aaKnown RBP eCLIP18.79■□□□□ 0.6
LIG1-203ENST00000536218 CCDC184Q52MB2 194 aa18.78■□□□□ 0.6
LIG1-203ENST00000536218 SPATA31E1Q6ZUB1 1445 aa18.77■□□□□ 0.6
LIG1-203ENST00000536218 CCDC144AA2RUR9 1427 aa18.76■□□□□ 0.59
LIG1-203ENST00000536218 CNTLNQ9NXG0 1405 aa18.76■□□□□ 0.59
LIG1-203ENST00000536218 ST20-MTHFSA0A0A6YYL1 179 aa18.74■□□□□ 0.59
LIG1-203ENST00000536218 KDM5DQ9BY66 1539 aa18.73■□□□□ 0.59
LIG1-203ENST00000536218 PRKRIP1Q9H875 184 aaPredicted RBP18.73■□□□□ 0.59
LIG1-203ENST00000536218 WDR7Q9Y4E6 1490 aa18.73■□□□□ 0.59
LIG1-203ENST00000536218 FAM9BQ8IZU0 186 aa18.73■□□□□ 0.59
LIG1-203ENST00000536218 NBPF1Q3BBV0 1214 aa18.71■□□□□ 0.59
LIG1-203ENST00000536218 ASXL2Q76L83 1435 aa18.7■□□□□ 0.58
LIG1-203ENST00000536218 MRS2Q9HD23 443 aa18.7■□□□□ 0.58
LIG1-203ENST00000536218 ROCK2O75116 1388 aaKnown RBP18.7■□□□□ 0.58
LIG1-203ENST00000536218 KIF3BO15066 747 aa18.7■□□□□ 0.58
LIG1-203ENST00000536218 FANCAO15360 1455 aa18.69■□□□□ 0.58
LIG1-203ENST00000536218 DUOX2Q9NRD8 1548 aa18.69■□□□□ 0.58
LIG1-203ENST00000536218 PLA2R1Q13018 1463 aa18.69■□□□□ 0.58
LIG1-203ENST00000536218 ABCC1P33527 1531 aa18.68■□□□□ 0.58
LIG1-203ENST00000536218 SCAPERQ9BY12 1400 aa18.68■□□□□ 0.58
LIG1-203ENST00000536218 MAST1Q9Y2H9 1570 aa18.68■□□□□ 0.58
LIG1-203ENST00000536218 UHRF1BP1Q6BDS2 1440 aa18.66■□□□□ 0.58
LIG1-203ENST00000536218 ERBINQ96RT1 1412 aa18.64■□□□□ 0.57
LIG1-203ENST00000536218 PLXNC1O60486 1568 aa18.64■□□□□ 0.57
LIG1-203ENST00000536218 RALGAPBQ86X10 1494 aa18.63■□□□□ 0.57
LIG1-203ENST00000536218 ADGRL1O94910 1474 aa18.63■□□□□ 0.57
LIG1-203ENST00000536218 SENP3-EIF4A1A0A087X0R7 540 aa18.62■□□□□ 0.57
LIG1-203ENST00000536218 UNC13BO14795 1591 aa18.61■□□□□ 0.57
LIG1-203ENST00000536218 BCORL1Q5H9F3 1711 aa18.61■□□□□ 0.57
LIG1-203ENST00000536218 WASHC2CQ9Y4E1 1318 aa18.59■□□□□ 0.57
LIG1-203ENST00000536218 USP35Q9P2H5 1018 aa18.59■□□□□ 0.57
LIG1-203ENST00000536218 KDM5CP41229 1560 aa18.59■□□□□ 0.57
LIG1-203ENST00000536218 PRAG1Q86YV5 1406 aa18.58■□□□□ 0.57
LIG1-203ENST00000536218 A2MP01023 1474 aa18.58■□□□□ 0.57
LIG1-203ENST00000536218 RTEL1-TNFRSF6BF6WH68 1400 aa18.57■□□□□ 0.56
LIG1-203ENST00000536218 CYB5RLQ6IPT4 315 aa18.57■□□□□ 0.56
LIG1-203ENST00000536218 IQGAP3Q86VI3 1631 aa18.56■□□□□ 0.56
LIG1-203ENST00000536218 ZFYVE16Q7Z3T8 1539 aa18.56■□□□□ 0.56
LIG1-203ENST00000536218 GGT6Q6P531 493 aa18.55■□□□□ 0.56
LIG1-203ENST00000536218 KANK1Q14678 1352 aa18.55■□□□□ 0.56
LIG1-203ENST00000536218 GSE1Q14687 1217 aa18.54■□□□□ 0.56
LIG1-203ENST00000536218 DHX29Q7Z478 1369 aaKnown RBP18.54■□□□□ 0.56
LIG1-203ENST00000536218 CD109Q6YHK3 1445 aa18.54■□□□□ 0.56
LIG1-203ENST00000536218 RSPH6AQ9H0K4 717 aa18.54■□□□□ 0.56
LIG1-203ENST00000536218 ATP7AQ04656 1500 aa18.53■□□□□ 0.56
LIG1-203ENST00000536218 VSIG10Q8N0Z9 540 aa18.53■□□□□ 0.56
LIG1-203ENST00000536218 ABCA9Q8IUA7 1624 aa18.53■□□□□ 0.56
LIG1-203ENST00000536218 ARAP3Q8WWN8 1544 aa18.53■□□□□ 0.56
LIG1-203ENST00000536218 PPM1GO15355 546 aaPredicted RBP18.52■□□□□ 0.56
LIG1-203ENST00000536218 RAPGEF3O95398 923 aa18.52■□□□□ 0.56
LIG1-203ENST00000536218 GLIPR1L2Q4G1C9 344 aa18.52■□□□□ 0.56
LIG1-203ENST00000536218 ARID4BQ4LE39 1312 aaPredicted RBP18.52■□□□□ 0.55
LIG1-203ENST00000536218 CHGAP10645 457 aaKnown RBP18.52■□□□□ 0.55
LIG1-203ENST00000536218 MAGI2Q86UL8 1455 aa18.51■□□□□ 0.55
LIG1-203ENST00000536218 TMC1Q8TDI8 760 aa18.49■□□□□ 0.55
LIG1-203ENST00000536218 PLEKHG5O94827 1062 aa18.48■□□□□ 0.55
LIG1-203ENST00000536218 FRAT1Q92837 279 aaPredicted RBP18.47■□□□□ 0.55
LIG1-203ENST00000536218 ZMYND15Q9H091 742 aa18.47■□□□□ 0.55
LIG1-203ENST00000536218 ATP10AO60312 1499 aa18.47■□□□□ 0.55
LIG1-203ENST00000536218 TESK2Q96S53 571 aa18.46■□□□□ 0.55
LIG1-203ENST00000536218 E9PCH4 1651 aa18.45■□□□□ 0.54
LIG1-203ENST00000536218 POLR1AO95602 1720 aaPredicted RBP18.45■□□□□ 0.54
LIG1-203ENST00000536218 TRPM1Q7Z4N2 1603 aa18.44■□□□□ 0.54
LIG1-203ENST00000536218 CC2D1BQ5T0F9 858 aaKnown RBP18.44■□□□□ 0.54
LIG1-203ENST00000536218 DISP3Q9P2K9 1392 aa18.44■□□□□ 0.54
LIG1-203ENST00000536218 TMF1P82094 1093 aa18.43■□□□□ 0.54
LIG1-203ENST00000536218 INO80Q9ULG1 1556 aaPredicted RBP18.43■□□□□ 0.54
LIG1-203ENST00000536218 ZNF518AQ6AHZ1 1483 aa18.43■□□□□ 0.54
LIG1-203ENST00000536218 ZBED9Q6R2W3 1325 aa18.42■□□□□ 0.54
LIG1-203ENST00000536218 GPRASP1Q5JY77 1395 aa18.42■□□□□ 0.54
LIG1-203ENST00000536218 SENP3Q9H4L4 574 aaPredicted RBP18.42■□□□□ 0.54
LIG1-203ENST00000536218 PANK3Q9H999 370 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms