RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MINK1Q8N4C8 1332 aaPredicted RBP10.58□□□□□ -0.71
USP28-202ENST00000535607 MAP2K5Q13163 448 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 PPP4R3BQ5MIZ7 849 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 ZDHHC16Q969W1 377 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 DAXXQ9UER7 740 aaPredicted RBP10.57□□□□□ -0.72
USP28-202ENST00000535607 FOSBP53539 338 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 PTGDRQ13258 359 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 CERKQ8TCT0 537 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 KHSRPQ92945 711 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP28-202ENST00000535607 KCNH8Q96L42 1107 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 GPR153Q6NV75 609 aa10.55□□□□□ -0.72
USP28-202ENST00000535607 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
USP28-202ENST00000535607 GPR37O15354 613 aa10.54□□□□□ -0.72
USP28-202ENST00000535607 LHX8Q68G74 356 aa10.54□□□□□ -0.72
USP28-202ENST00000535607 BRPF1P55201 1214 aaPredicted RBP10.53□□□□□ -0.72
USP28-202ENST00000535607 LHX6Q9UPM6 363 aa10.52□□□□□ -0.73
USP28-202ENST00000535607 EIF4G1Q04637 1599 aaKnown RBP10.52□□□□□ -0.73
USP28-202ENST00000535607 IRF6O14896 467 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 PRIM1P49642 420 aaKnown RBP10.51□□□□□ -0.73
USP28-202ENST00000535607 TMEM132AQ24JP5 1023 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 TSR1Q2NL82 804 aaKnown RBP10.51□□□□□ -0.73
USP28-202ENST00000535607 C6orf132Q5T0Z8 1188 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CCDC102AQ96A19 550 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CDHR5Q9HBB8 845 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CECR2Q9BXF3 1484 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 KDM4FA0A1W2PPD8 638 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 TRIM66O15016 1216 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 HOXB1P14653 301 aaPredicted RBP10.5□□□□□ -0.73
USP28-202ENST00000535607 PEG3Q9GZU2 1588 aa10.49□□□□□ -0.73
USP28-202ENST00000535607 OTUD5Q96G74 571 aa10.49□□□□□ -0.73
USP28-202ENST00000535607 PTPREP23469 700 aa10.48□□□□□ -0.73
USP28-202ENST00000535607 PDE4DQ08499 809 aa10.48□□□□□ -0.73
USP28-202ENST00000535607 TTLL12Q14166 644 aaPredicted RBP10.48□□□□□ -0.73
USP28-202ENST00000535607 MYT1Q01538 1121 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 ADAM33Q9BZ11 813 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 MROH2BQ7Z745 1585 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 RSF1Q96T23 1441 aaPredicted RBP10.46□□□□□ -0.74
USP28-202ENST00000535607 FECHP22830 423 aa10.45□□□□□ -0.74
USP28-202ENST00000535607 SMARCA2P51531 1590 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 OATP04181 439 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 BCL2L12Q9HB09 334 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 NPDC1Q9NQX5 325 aaPredicted RBP10.44□□□□□ -0.74
USP28-202ENST00000535607 ERBB3P21860 1342 aa10.43□□□□□ -0.74
USP28-202ENST00000535607 RBM27Q9P2N5 1060 aaKnown RBP10.43□□□□□ -0.74
USP28-202ENST00000535607 PADI6Q6TGC4 694 aa10.42□□□□□ -0.74
USP28-202ENST00000535607 KDM4CQ9H3R0 1056 aa10.42□□□□□ -0.74
USP28-202ENST00000535607 GPBP1L1Q9HC44 474 aaPredicted RBP10.42□□□□□ -0.74
USP28-202ENST00000535607 PRSS12P56730 875 aa10.41□□□□□ -0.74
USP28-202ENST00000535607 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 PPP1R3GB7ZBB8 358 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 AMHR2Q16671 573 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 RBM46Q8TBY0 533 aaKnown RBP10.4□□□□□ -0.74
USP28-202ENST00000535607 EMP3P54852 163 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 CDCA7LQ96GN5 454 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 KCNK17Q96T54 332 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 ATAD2BQ9ULI0 1458 aa10.38□□□□□ -0.75
USP28-202ENST00000535607 CLCN1P35523 988 aa10.38□□□□□ -0.75
USP28-202ENST00000535607 CC2D2AQ9P2K1 1620 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 PACS2Q86VP3 889 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 DDRGK1Q96HY6 314 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 WIZO95785 1651 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 NBPF26B4DH59 902 aa10.36□□□□□ -0.75
USP28-202ENST00000535607 ZEB1P37275 1124 aaPredicted RBP10.36□□□□□ -0.75
USP28-202ENST00000535607 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
USP28-202ENST00000535607 NCAPD3P42695 1498 aa10.36□□□□□ -0.75
USP28-202ENST00000535607 TOP2AP11388 1531 aaKnown RBP10.35□□□□□ -0.75
USP28-202ENST00000535607 SUPT5HO00267 1087 aaKnown RBP10.35□□□□□ -0.75
USP28-202ENST00000535607 PARP9Q8IXQ6 854 aa10.35□□□□□ -0.75
USP28-202ENST00000535607 IL27Q8NEV9 243 aa10.35□□□□□ -0.75
USP28-202ENST00000535607 MDM2Q00987 491 aaPredicted RBP10.34□□□□□ -0.75
USP28-202ENST00000535607 FAM163AQ96GL9 167 aaPredicted RBP10.34□□□□□ -0.75
USP28-202ENST00000535607 GPCPD1Q9NPB8 672 aa10.34□□□□□ -0.75
USP28-202ENST00000535607 ST18O60284 1047 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
USP28-202ENST00000535607 PCGF6Q9BYE7 350 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 GTF3C3Q9Y5Q9 886 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 ADGRG1Q9Y653 693 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 BAZ1BQ9UIG0 1483 aaKnown RBP10.33□□□□□ -0.76
USP28-202ENST00000535607 COL9A1P20849 921 aa10.32□□□□□ -0.76
USP28-202ENST00000535607 FAM161AQ3B820 660 aa10.32□□□□□ -0.76
USP28-202ENST00000535607 GIGYF2Q6Y7W6 1299 aaKnown RBP10.32□□□□□ -0.76
USP28-202ENST00000535607 TRIM6-TRIM34B2RNG4 842 aa10.31□□□□□ -0.76
USP28-202ENST00000535607 ARHGAP33O14559 1287 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PBX2P40425 430 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PXYLP1Q8TE99 480 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PNMA3Q9UL41 463 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.29□□□□□ -0.76
USP28-202ENST00000535607 FAM205CA6NFA0 338 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 ERICH6Q7L0X2 663 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 TTC13Q8NBP0 860 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 ATP1B4Q9UN42 357 aaPredicted RBP10.29□□□□□ -0.76
USP28-202ENST00000535607 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
USP28-202ENST00000535607 SLC4A3P48751 1232 aa10.28□□□□□ -0.76
USP28-202ENST00000535607 NUDT18Q6ZVK8 323 aa10.28□□□□□ -0.76
USP28-202ENST00000535607 HDGFP51858 240 aaKnown RBP10.27□□□□□ -0.77
USP28-202ENST00000535607 TATDN2Q93075 761 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 FAM117AQ9C073 453 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 TSKSQ9UJT2 592 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 DNAJB2P25686 324 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms