RNA–Protein interactions for RNA: ENST00000529046.5

CSDE1-212, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-212ENST00000529046 P3H3Q8IVL6 736 aa11.49□□□□□ -0.57
CSDE1-212ENST00000529046 ADGRD1Q6QNK2 874 aa11.48□□□□□ -0.57
CSDE1-212ENST00000529046 TK2O00142 265 aa11.47□□□□□ -0.57
CSDE1-212ENST00000529046 NBR1Q14596 966 aa11.47□□□□□ -0.57
CSDE1-212ENST00000529046 GRXCR2A6NFK2 248 aa11.44□□□□□ -0.58
CSDE1-212ENST00000529046 RBM33Q96EV2 1170 aaKnown RBP11.44□□□□□ -0.58
CSDE1-212ENST00000529046 MYT1LQ9UL68 1186 aa11.44□□□□□ -0.58
CSDE1-212ENST00000529046 PPP1R3GB7ZBB8 358 aa11.42□□□□□ -0.58
CSDE1-212ENST00000529046 EN1Q05925 392 aaPredicted RBP11.42□□□□□ -0.58
CSDE1-212ENST00000529046 RNF166Q96A37 237 aaPredicted RBP11.42□□□□□ -0.58
CSDE1-212ENST00000529046 C6orf132Q5T0Z8 1188 aa11.41□□□□□ -0.58
CSDE1-212ENST00000529046 SLC4A5Q9BY07 1137 aa11.41□□□□□ -0.58
CSDE1-212ENST00000529046 VPS9D1Q9Y2B5 631 aa11.41□□□□□ -0.58
CSDE1-212ENST00000529046 MAP3K7O43318 606 aa11.4□□□□□ -0.58
CSDE1-212ENST00000529046 ZBED2Q9BTP6 218 aa11.4□□□□□ -0.58
CSDE1-212ENST00000529046 HRO43593 1189 aa11.39□□□□□ -0.59
CSDE1-212ENST00000529046 COL9A1P20849 921 aa11.38□□□□□ -0.59
CSDE1-212ENST00000529046 STAC3Q96MF2 364 aa11.37□□□□□ -0.59
CSDE1-212ENST00000529046 TSR1Q2NL82 804 aaKnown RBP11.36□□□□□ -0.59
CSDE1-212ENST00000529046 OSBPP22059 807 aa11.35□□□□□ -0.59
CSDE1-212ENST00000529046 PRIM1P49642 420 aaKnown RBP11.35□□□□□ -0.59
CSDE1-212ENST00000529046 MLLT3P42568 568 aaPredicted RBP11.34□□□□□ -0.59
CSDE1-212ENST00000529046 PROX2Q3B8N5 592 aa11.33□□□□□ -0.6
CSDE1-212ENST00000529046 BCANQ96GW7 911 aa11.33□□□□□ -0.6
CSDE1-212ENST00000529046 NBPF3Q9H094 633 aa11.31□□□□□ -0.6
CSDE1-212ENST00000529046 BHMG1C9JSJ3 638 aaPredicted RBP11.3□□□□□ -0.6
CSDE1-212ENST00000529046 SEMA3EO15041 775 aa11.3□□□□□ -0.6
CSDE1-212ENST00000529046 RABGEF1Q9UJ41 708 aa11.3□□□□□ -0.6
CSDE1-212ENST00000529046 TRIM6-TRIM34B2RNG4 842 aa11.28□□□□□ -0.6
CSDE1-212ENST00000529046 ONECUT3O60422 494 aaPredicted RBP11.28□□□□□ -0.6
CSDE1-212ENST00000529046 MRPL50Q8N5N7 158 aaKnown RBP11.28□□□□□ -0.6
CSDE1-212ENST00000529046 CERKQ8TCT0 537 aa11.28□□□□□ -0.6
CSDE1-212ENST00000529046 CDHR5Q9HBB8 845 aa11.28□□□□□ -0.6
CSDE1-212ENST00000529046 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
CSDE1-212ENST00000529046 GOLGA8CPA6NN73 597 aa11.25□□□□□ -0.61
CSDE1-212ENST00000529046 KCTD12Q96CX2 325 aaKnown RBP11.25□□□□□ -0.61
CSDE1-212ENST00000529046 CDCA7LQ96GN5 454 aa11.23□□□□□ -0.61
CSDE1-212ENST00000529046 TESPA1A2RU30 521 aaPredicted RBP11.22□□□□□ -0.61
CSDE1-212ENST00000529046 PRSS12P56730 875 aa11.22□□□□□ -0.61
CSDE1-212ENST00000529046 TSKSQ9UJT2 592 aa11.22□□□□□ -0.61
CSDE1-212ENST00000529046 LAPTM4BQ86VI4 370 aa11.21□□□□□ -0.61
CSDE1-212ENST00000529046 PACS2Q86VP3 889 aa11.21□□□□□ -0.61
CSDE1-212ENST00000529046 SMYD5Q6GMV2 418 aa11.2□□□□□ -0.62
CSDE1-212ENST00000529046 WNT2BQ93097 391 aa11.2□□□□□ -0.62
CSDE1-212ENST00000529046 SEPT9Q9UHD8 586 aaPredicted RBP11.2□□□□□ -0.62
CSDE1-212ENST00000529046 RBM27Q9P2N5 1060 aaKnown RBP11.19□□□□□ -0.62
CSDE1-212ENST00000529046 HCSTQ9UBK5 93 aa11.19□□□□□ -0.62
CSDE1-212ENST00000529046 NPDC1Q9NQX5 325 aaPredicted RBP11.18□□□□□ -0.62
CSDE1-212ENST00000529046 NUTM2FA1L443 756 aa11.17□□□□□ -0.62
CSDE1-212ENST00000529046 FAM198AQ9UFP1 575 aa11.17□□□□□ -0.62
CSDE1-212ENST00000529046 FAM98CQ17RN3 349 aaKnown RBP11.16□□□□□ -0.62
CSDE1-212ENST00000529046 THSD4Q6ZMP0 1018 aa11.16□□□□□ -0.62
CSDE1-212ENST00000529046 ANKK1Q8NFD2 765 aa11.16□□□□□ -0.62
CSDE1-212ENST00000529046 NBPF26B4DH59 902 aa11.15□□□□□ -0.62
CSDE1-212ENST00000529046 PTGDRQ13258 359 aa11.15□□□□□ -0.62
CSDE1-212ENST00000529046 PADI6Q6TGC4 694 aa11.15□□□□□ -0.62
CSDE1-212ENST00000529046 ZFRQ96KR1 1074 aaKnown RBP11.14□□□□□ -0.63
CSDE1-212ENST00000529046 PTPN5P54829 565 aa11.13□□□□□ -0.63
CSDE1-212ENST00000529046 RBM26Q5T8P6 1007 aaKnown RBP11.13□□□□□ -0.63
CSDE1-212ENST00000529046 TTC13Q8NBP0 860 aa11.13□□□□□ -0.63
CSDE1-212ENST00000529046 PNMA3Q9UL41 463 aa11.13□□□□□ -0.63
CSDE1-212ENST00000529046 SMAPO00193 183 aa11.12□□□□□ -0.63
CSDE1-212ENST00000529046 TATDN2Q93075 761 aa11.12□□□□□ -0.63
CSDE1-212ENST00000529046 FCHSD2O94868 740 aa11.11□□□□□ -0.63
CSDE1-212ENST00000529046 NUDT18Q6ZVK8 323 aa11.1□□□□□ -0.63
CSDE1-212ENST00000529046 C3orf80F5H4A9 247 aa11.09□□□□□ -0.63
CSDE1-212ENST00000529046 BCAMP50895 628 aa11.09□□□□□ -0.63
CSDE1-212ENST00000529046 SOWAHBA6NEL2 793 aa11.08□□□□□ -0.64
CSDE1-212ENST00000529046 TULP1O00294 542 aaPredicted RBP11.08□□□□□ -0.64
CSDE1-212ENST00000529046 LRCH3Q96II8 777 aa11.07□□□□□ -0.64
CSDE1-212ENST00000529046 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.06□□□□□ -0.64
CSDE1-212ENST00000529046 HIC1Q14526 733 aa11.04□□□□□ -0.64
CSDE1-212ENST00000529046 SAMD7Q7Z3H4 446 aa11.03□□□□□ -0.64
CSDE1-212ENST00000529046 GPIHBP1Q8IV16 184 aa11.03□□□□□ -0.64
CSDE1-212ENST00000529046 HPS5Q9UPZ3 1129 aa11.02□□□□□ -0.65
CSDE1-212ENST00000529046 GPR37O15354 613 aa11.01□□□□□ -0.65
CSDE1-212ENST00000529046 HDGFP51858 240 aaKnown RBP11.01□□□□□ -0.65
CSDE1-212ENST00000529046 EYA1Q99502 592 aa11.01□□□□□ -0.65
CSDE1-212ENST00000529046 TSR3Q9UJK0 312 aaKnown RBP11.01□□□□□ -0.65
CSDE1-212ENST00000529046 ADGRG1Q9Y653 693 aa11.01□□□□□ -0.65
CSDE1-212ENST00000529046 GNPATO15228 680 aa11□□□□□ -0.65
CSDE1-212ENST00000529046 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11□□□□□ -0.65
CSDE1-212ENST00000529046 RBM46Q8TBY0 533 aaKnown RBP11□□□□□ -0.65
CSDE1-212ENST00000529046 WBP1LQ9NX94 342 aa11□□□□□ -0.65
CSDE1-212ENST00000529046 PLA2G2EQ9NZK7 142 aa11□□□□□ -0.65
CSDE1-212ENST00000529046 NYAP1Q6ZVC0 841 aa10.99□□□□□ -0.65
CSDE1-212ENST00000529046 FAM161AQ3B820 660 aa10.98□□□□□ -0.65
CSDE1-212ENST00000529046 RNF40O75150 1001 aa10.97□□□□□ -0.65
CSDE1-212ENST00000529046 SWT1Q5T5J6 900 aaKnown RBP10.97□□□□□ -0.65
CSDE1-212ENST00000529046 DNAJB2P25686 324 aa10.96□□□□□ -0.65
CSDE1-212ENST00000529046 PPP4CP60510 307 aa10.96□□□□□ -0.65
CSDE1-212ENST00000529046 FECHP22830 423 aa10.95□□□□□ -0.66
CSDE1-212ENST00000529046 OATP04181 439 aa10.94□□□□□ -0.66
CSDE1-212ENST00000529046 SLC4A3P48751 1232 aa10.94□□□□□ -0.66
CSDE1-212ENST00000529046 SLF2Q8IX21 1173 aa10.94□□□□□ -0.66
CSDE1-212ENST00000529046 RCCD1A6NED2 376 aa10.92□□□□□ -0.66
CSDE1-212ENST00000529046 LMOD2Q6P5Q4 547 aa10.92□□□□□ -0.66
CSDE1-212ENST00000529046 PXYLP1Q8TE99 480 aa10.91□□□□□ -0.66
CSDE1-212ENST00000529046 NECTIN2Q92692 538 aa10.91□□□□□ -0.66
CSDE1-212ENST00000529046 TMEM134Q9H6X4 195 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms