RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 C6orf132Q5T0Z8 1188 aa10.21□□□□□ -0.77
CD44-215ENST00000525241 POTEBQ6S5H4 581 aa10.21□□□□□ -0.77
CD44-215ENST00000525241 BCL2L12Q9HB09 334 aa10.21□□□□□ -0.77
CD44-215ENST00000525241 CDHR5Q9HBB8 845 aa10.21□□□□□ -0.77
CD44-215ENST00000525241 NPDC1Q9NQX5 325 aaPredicted RBP10.2□□□□□ -0.78
CD44-215ENST00000525241 PTGDRQ13258 359 aa10.18□□□□□ -0.78
CD44-215ENST00000525241 HS3ST6Q96QI5 342 aa10.18□□□□□ -0.78
CD44-215ENST00000525241 ZMYND10O75800 440 aa10.17□□□□□ -0.78
CD44-215ENST00000525241 FCHSD2O94868 740 aa10.17□□□□□ -0.78
CD44-215ENST00000525241 POTEEQ6S8J3 1075 aa10.16□□□□□ -0.78
CD44-215ENST00000525241 PTPREP23469 700 aa10.15□□□□□ -0.78
CD44-215ENST00000525241 BARGINQ6ZT62 677 aa10.15□□□□□ -0.78
CD44-215ENST00000525241 ZNF687Q8N1G0 1237 aa10.15□□□□□ -0.78
CD44-215ENST00000525241 COL9A1P20849 921 aa10.14□□□□□ -0.79
CD44-215ENST00000525241 HIC1Q14526 733 aa10.14□□□□□ -0.79
CD44-215ENST00000525241 GNPATO15228 680 aa10.13□□□□□ -0.79
CD44-215ENST00000525241 CERKQ8TCT0 537 aa10.13□□□□□ -0.79
CD44-215ENST00000525241 KCNK17Q96T54 332 aa10.12□□□□□ -0.79
CD44-215ENST00000525241 PPP1R3GB7ZBB8 358 aa10.11□□□□□ -0.79
CD44-215ENST00000525241 FECHP22830 423 aa10.11□□□□□ -0.79
CD44-215ENST00000525241 PSEN2P49810 448 aa10.11□□□□□ -0.79
CD44-215ENST00000525241 AXIN2Q9Y2T1 843 aa10.11□□□□□ -0.79
CD44-215ENST00000525241 ARHGAP33O14559 1287 aa10.1□□□□□ -0.79
CD44-215ENST00000525241 PBX2P40425 430 aa10.09□□□□□ -0.79
CD44-215ENST00000525241 PRSS12P56730 875 aa10.08□□□□□ -0.8
CD44-215ENST00000525241 DMRTA1Q5VZB9 504 aa10.07□□□□□ -0.8
CD44-215ENST00000525241 TTC13Q8NBP0 860 aa10.07□□□□□ -0.8
CD44-215ENST00000525241 CDCA7LQ96GN5 454 aa10.07□□□□□ -0.8
CD44-215ENST00000525241 KCNH8Q96L42 1107 aa10.07□□□□□ -0.8
CD44-215ENST00000525241 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
CD44-215ENST00000525241 MAP2K5Q13163 448 aa10.06□□□□□ -0.8
CD44-215ENST00000525241 PADI6Q6TGC4 694 aa10.06□□□□□ -0.8
CD44-215ENST00000525241 KRI1Q8N9T8 703 aaKnown RBP10.06□□□□□ -0.8
CD44-215ENST00000525241 ZBED2Q9BTP6 218 aa10.06□□□□□ -0.8
CD44-215ENST00000525241 SLC24A3Q9HC58 644 aa10.06□□□□□ -0.8
CD44-215ENST00000525241 FAM198AQ9UFP1 575 aa10.06□□□□□ -0.8
CD44-215ENST00000525241 MINK1Q8N4C8 1332 aaPredicted RBP10.06□□□□□ -0.8
CD44-215ENST00000525241 IRF6O14896 467 aa10.04□□□□□ -0.8
CD44-215ENST00000525241 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
CD44-215ENST00000525241 POTEGQ6S5H5 508 aa10.04□□□□□ -0.8
CD44-215ENST00000525241 TSKSQ9UJT2 592 aa10.04□□□□□ -0.8
CD44-215ENST00000525241 POTEMA6NI47 508 aa10.03□□□□□ -0.8
CD44-215ENST00000525241 TRIM6-TRIM34B2RNG4 842 aa10.03□□□□□ -0.8
CD44-215ENST00000525241 SLC4A5Q9BY07 1137 aa10.03□□□□□ -0.8
CD44-215ENST00000525241 ONECUT3O60422 494 aaPredicted RBP10.01□□□□□ -0.81
CD44-215ENST00000525241 AK7Q96M32 723 aa10.01□□□□□ -0.81
CD44-215ENST00000525241 LSM11P83369 360 aaKnown RBP eCLIP10□□□□□ -0.81
CD44-215ENST00000525241 FAM161AQ3B820 660 aa10□□□□□ -0.81
CD44-215ENST00000525241 CCDC102AQ96A19 550 aa10□□□□□ -0.81
CD44-215ENST00000525241 VPS9D1Q9Y2B5 631 aa10□□□□□ -0.81
CD44-215ENST00000525241 ADGRG1Q9Y653 693 aa10□□□□□ -0.81
CD44-215ENST00000525241 C3orf80F5H4A9 247 aa9.99□□□□□ -0.81
CD44-215ENST00000525241 KRTAP3-3Q9BYR6 98 aa9.99□□□□□ -0.81
CD44-215ENST00000525241 KRTAP3-2Q9BYR7 98 aa9.99□□□□□ -0.81
CD44-215ENST00000525241 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
CD44-215ENST00000525241 TK2O00142 265 aa9.97□□□□□ -0.81
CD44-215ENST00000525241 TRIM66O15016 1216 aa9.97□□□□□ -0.81
CD44-215ENST00000525241 PACS2Q86VP3 889 aa9.97□□□□□ -0.81
CD44-215ENST00000525241 CDAN1Q8IWY9 1227 aa9.96□□□□□ -0.82
CD44-215ENST00000525241 RABGEF1Q9UJ41 708 aa9.96□□□□□ -0.82
CD44-215ENST00000525241 OATP04181 439 aa9.95□□□□□ -0.82
CD44-215ENST00000525241 METTL3Q86U44 580 aaKnown RBP9.95□□□□□ -0.82
CD44-215ENST00000525241 PXYLP1Q8TE99 480 aa9.95□□□□□ -0.82
CD44-215ENST00000525241 TATDN2Q93075 761 aa9.95□□□□□ -0.82
CD44-215ENST00000525241 PHOX2BQ99453 314 aa9.95□□□□□ -0.82
CD44-215ENST00000525241 EYA1Q99502 592 aa9.95□□□□□ -0.82
CD44-215ENST00000525241 NBPF26B4DH59 902 aa9.94□□□□□ -0.82
CD44-215ENST00000525241 ADGRD1Q6QNK2 874 aa9.94□□□□□ -0.82
CD44-215ENST00000525241 NUDT18Q6ZVK8 323 aa9.94□□□□□ -0.82
CD44-215ENST00000525241 PNMA3Q9UL41 463 aa9.94□□□□□ -0.82
CD44-215ENST00000525241 BHMG1C9JSJ3 638 aaPredicted RBP9.93□□□□□ -0.82
CD44-215ENST00000525241 SMAPO00193 183 aa9.93□□□□□ -0.82
CD44-215ENST00000525241 ANKRD13DQ6ZTN6 518 aa9.93□□□□□ -0.82
CD44-215ENST00000525241 RBM46Q8TBY0 533 aaKnown RBP9.93□□□□□ -0.82
CD44-215ENST00000525241 HRO43593 1189 aa9.91□□□□□ -0.82
CD44-215ENST00000525241 AMHR2Q16671 573 aa9.91□□□□□ -0.82
CD44-215ENST00000525241 PDE4DQ08499 809 aa9.9□□□□□ -0.82
CD44-215ENST00000525241 SEPT9Q9UHD8 586 aaPredicted RBP9.9□□□□□ -0.82
CD44-215ENST00000525241 RCCD1A6NED2 376 aa9.88□□□□□ -0.83
CD44-215ENST00000525241 NLRP7Q8WX94 980 aa9.88□□□□□ -0.83
CD44-215ENST00000525241 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
CD44-215ENST00000525241 BRPF1P55201 1214 aaPredicted RBP9.87□□□□□ -0.83
CD44-215ENST00000525241 TMUB1Q9BVT8 246 aa9.87□□□□□ -0.83
CD44-215ENST00000525241 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.86□□□□□ -0.83
CD44-215ENST00000525241 FAM98CQ17RN3 349 aaKnown RBP9.86□□□□□ -0.83
CD44-215ENST00000525241 LAPTM4BQ86VI4 370 aa9.86□□□□□ -0.83
CD44-215ENST00000525241 REPIN1Q9BWE0 567 aaKnown RBP9.86□□□□□ -0.83
CD44-215ENST00000525241 DNAJB2P25686 324 aa9.85□□□□□ -0.83
CD44-215ENST00000525241 MDM2Q00987 491 aaPredicted RBP9.85□□□□□ -0.83
CD44-215ENST00000525241 PARP9Q8IXQ6 854 aa9.85□□□□□ -0.83
CD44-215ENST00000525241 NEUROD2Q15784 382 aa9.84□□□□□ -0.83
CD44-215ENST00000525241 MRPL50Q8N5N7 158 aaKnown RBP9.84□□□□□ -0.83
CD44-215ENST00000525241 TMEM134Q9H6X4 195 aa9.84□□□□□ -0.83
CD44-215ENST00000525241 CLCN1P35523 988 aa9.83□□□□□ -0.84
CD44-215ENST00000525241 TTLL12Q14166 644 aaPredicted RBP9.83□□□□□ -0.84
CD44-215ENST00000525241 GPBP1L1Q9HC44 474 aaPredicted RBP9.83□□□□□ -0.84
CD44-215ENST00000525241 PCDH10Q9P2E7 1040 aa9.83□□□□□ -0.84
CD44-215ENST00000525241 ZFRQ96KR1 1074 aaKnown RBP9.82□□□□□ -0.84
CD44-215ENST00000525241 GPCPD1Q9NPB8 672 aa9.82□□□□□ -0.84
CD44-215ENST00000525241 DAXXQ9UER7 740 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms