RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 WNT2BQ93097 391 aa9.63□□□□□ -0.87
NUP54-212ENST00000513248 PCDHGA10Q9Y5H3 936 aa9.63□□□□□ -0.87
NUP54-212ENST00000513248 PHF14O94880 888 aa9.61□□□□□ -0.87
NUP54-212ENST00000513248 TYW1BQ6NUM6 668 aa9.61□□□□□ -0.87
NUP54-212ENST00000513248 CFAP44Q96MT7 982 aa9.61□□□□□ -0.87
NUP54-212ENST00000513248 RABGEF1Q9UJ41 708 aa9.61□□□□□ -0.87
NUP54-212ENST00000513248 CAMK2BQ13554 666 aa9.6□□□□□ -0.87
NUP54-212ENST00000513248 SLC24A1O60721 1099 aa9.59□□□□□ -0.87
NUP54-212ENST00000513248 CADPS2Q86UW7 1296 aa9.59□□□□□ -0.87
NUP54-212ENST00000513248 LAPTM4BQ86VI4 370 aa9.57□□□□□ -0.88
NUP54-212ENST00000513248 ONECUT3O60422 494 aaPredicted RBP9.56□□□□□ -0.88
NUP54-212ENST00000513248 EPAS1Q99814 870 aa9.56□□□□□ -0.88
NUP54-212ENST00000513248 COL9A1P20849 921 aa9.55□□□□□ -0.88
NUP54-212ENST00000513248 ANKK1Q8NFD2 765 aa9.55□□□□□ -0.88
NUP54-212ENST00000513248 A0A0G2JS52 829 aa9.54□□□□□ -0.88
NUP54-212ENST00000513248 PROX2Q3B8N5 592 aa9.54□□□□□ -0.88
NUP54-212ENST00000513248 NYAP1Q6ZVC0 841 aa9.53□□□□□ -0.88
NUP54-212ENST00000513248 ITGBL1O95965 494 aaPredicted RBP9.51□□□□□ -0.89
NUP54-212ENST00000513248 C6orf132Q5T0Z8 1188 aa9.51□□□□□ -0.89
NUP54-212ENST00000513248 TSHZ2Q9NRE2 1034 aa9.51□□□□□ -0.89
NUP54-212ENST00000513248 SOWAHBA6NEL2 793 aa9.5□□□□□ -0.89
NUP54-212ENST00000513248 DPYSL4O14531 572 aa9.5□□□□□ -0.89
NUP54-212ENST00000513248 KIAA1468Q9P260 1216 aa9.49□□□□□ -0.89
NUP54-212ENST00000513248 ZFRQ96KR1 1074 aaKnown RBP9.48□□□□□ -0.89
NUP54-212ENST00000513248 TRIM6-TRIM34B2RNG4 842 aa9.47□□□□□ -0.89
NUP54-212ENST00000513248 BCAMP50895 628 aa9.45□□□□□ -0.9
NUP54-212ENST00000513248 HAP1P54257 671 aaPredicted RBP9.45□□□□□ -0.9
NUP54-212ENST00000513248 FAM98CQ17RN3 349 aaKnown RBP9.45□□□□□ -0.9
NUP54-212ENST00000513248 KDM2AQ9Y2K7 1162 aa9.45□□□□□ -0.9
NUP54-212ENST00000513248 PDIA6Q15084 440 aa9.44□□□□□ -0.9
NUP54-212ENST00000513248 VSIG10Q8N0Z9 540 aa9.44□□□□□ -0.9
NUP54-212ENST00000513248 IRX2Q9BZI1 471 aaPredicted RBP9.43□□□□□ -0.9
NUP54-212ENST00000513248 SPDYE16A6NNV3 312 aaPredicted RBP9.42□□□□□ -0.9
NUP54-212ENST00000513248 EN1Q05925 392 aaPredicted RBP9.42□□□□□ -0.9
NUP54-212ENST00000513248 DDX12PQ92771 950 aa9.42□□□□□ -0.9
NUP54-212ENST00000513248 WBP1LQ9NX94 342 aa9.41□□□□□ -0.9
NUP54-212ENST00000513248 SEPT9Q9UHD8 586 aaPredicted RBP9.41□□□□□ -0.9
NUP54-212ENST00000513248 RBM33Q96EV2 1170 aaKnown RBP9.4□□□□□ -0.9
NUP54-212ENST00000513248 NBR1Q14596 966 aa9.39□□□□□ -0.91
NUP54-212ENST00000513248 PACS2Q86VP3 889 aa9.39□□□□□ -0.91
NUP54-212ENST00000513248 LRCH3Q96II8 777 aa9.39□□□□□ -0.91
NUP54-212ENST00000513248 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.39□□□□□ -0.91
NUP54-212ENST00000513248 TSR3Q9UJK0 312 aaKnown RBP9.39□□□□□ -0.91
NUP54-212ENST00000513248 ARIH1Q9Y4X5 557 aaPredicted RBP9.39□□□□□ -0.91
NUP54-212ENST00000513248 MAP3K7O43318 606 aa9.38□□□□□ -0.91
NUP54-212ENST00000513248 KCNC4Q03721 635 aa9.38□□□□□ -0.91
NUP54-212ENST00000513248 CERKQ8TCT0 537 aa9.37□□□□□ -0.91
NUP54-212ENST00000513248 TSKSQ9UJT2 592 aa9.36□□□□□ -0.91
NUP54-212ENST00000513248 TSR1Q2NL82 804 aaKnown RBP9.35□□□□□ -0.91
NUP54-212ENST00000513248 HPS5Q9UPZ3 1129 aa9.35□□□□□ -0.91
NUP54-212ENST00000513248 E2F4Q16254 413 aa9.34□□□□□ -0.91
NUP54-212ENST00000513248 PRSS12P56730 875 aa9.32□□□□□ -0.92
NUP54-212ENST00000513248 CDCA7LQ96GN5 454 aa9.32□□□□□ -0.92
NUP54-212ENST00000513248 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
NUP54-212ENST00000513248 RBM27Q9P2N5 1060 aaKnown RBP9.3□□□□□ -0.92
NUP54-212ENST00000513248 PPP4CP60510 307 aa9.29□□□□□ -0.92
NUP54-212ENST00000513248 NBPF26B4DH59 902 aa9.28□□□□□ -0.92
NUP54-212ENST00000513248 PRIM1P49642 420 aaKnown RBP9.26□□□□□ -0.93
NUP54-212ENST00000513248 SAMD7Q7Z3H4 446 aa9.26□□□□□ -0.93
NUP54-212ENST00000513248 FAM198AQ9UFP1 575 aa9.26□□□□□ -0.93
NUP54-212ENST00000513248 OSBPP22059 807 aa9.25□□□□□ -0.93
NUP54-212ENST00000513248 LAPTM4AQ15012 233 aa9.25□□□□□ -0.93
NUP54-212ENST00000513248 TJAP1Q5JTD0 557 aa9.25□□□□□ -0.93
NUP54-212ENST00000513248 TATDN2Q93075 761 aa9.25□□□□□ -0.93
NUP54-212ENST00000513248 GRXCR2A6NFK2 248 aa9.24□□□□□ -0.93
NUP54-212ENST00000513248 SMAPO00193 183 aa9.23□□□□□ -0.93
NUP54-212ENST00000513248 NECTIN2Q92692 538 aa9.22□□□□□ -0.93
NUP54-212ENST00000513248 PNMA3Q9UL41 463 aa9.22□□□□□ -0.93
NUP54-212ENST00000513248 C3orf80F5H4A9 247 aa9.21□□□□□ -0.94
NUP54-212ENST00000513248 TTC13Q8NBP0 860 aa9.21□□□□□ -0.94
NUP54-212ENST00000513248 IL21Q9HBE4 155 aa9.21□□□□□ -0.94
NUP54-212ENST00000513248 HDGFP51858 240 aaKnown RBP9.2□□□□□ -0.94
NUP54-212ENST00000513248 Q6ZNB5 142 aa9.19□□□□□ -0.94
NUP54-212ENST00000513248 NUDT18Q6ZVK8 323 aa9.19□□□□□ -0.94
NUP54-212ENST00000513248 MTRQ99707 1265 aa9.19□□□□□ -0.94
NUP54-212ENST00000513248 CDHR5Q9HBB8 845 aa9.19□□□□□ -0.94
NUP54-212ENST00000513248 KCNV2Q8TDN2 545 aa9.17□□□□□ -0.94
NUP54-212ENST00000513248 NPDC1Q9NQX5 325 aaPredicted RBP9.16□□□□□ -0.94
NUP54-212ENST00000513248 V9GY48 417 aaPredicted RBP9.16□□□□□ -0.94
NUP54-212ENST00000513248 P3H3Q8IVL6 736 aa9.15□□□□□ -0.94
NUP54-212ENST00000513248 APLP1P51693 650 aa9.14□□□□□ -0.95
NUP54-212ENST00000513248 PPP1R18Q6NYC8 613 aa9.14□□□□□ -0.95
NUP54-212ENST00000513248 SLF2Q8IX21 1173 aa9.14□□□□□ -0.95
NUP54-212ENST00000513248 PADI6Q6TGC4 694 aa9.13□□□□□ -0.95
NUP54-212ENST00000513248 ARHGEF1Q92888 912 aaKnown RBP9.13□□□□□ -0.95
NUP54-212ENST00000513248 PRKD2Q9BZL6 878 aa9.13□□□□□ -0.95
NUP54-212ENST00000513248 RNF40O75150 1001 aa9.12□□□□□ -0.95
NUP54-212ENST00000513248 SLC4A3P48751 1232 aa9.12□□□□□ -0.95
NUP54-212ENST00000513248 GFRA3O60609 400 aa9.11□□□□□ -0.95
NUP54-212ENST00000513248 ZNF516Q92618 1163 aa9.11□□□□□ -0.95
NUP54-212ENST00000513248 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.11□□□□□ -0.95
NUP54-212ENST00000513248 NRG2O14511 850 aaPredicted RBP9.1□□□□□ -0.95
NUP54-212ENST00000513248 SWT1Q5T5J6 900 aaKnown RBP9.1□□□□□ -0.95
NUP54-212ENST00000513248 EYA1Q99502 592 aa9.1□□□□□ -0.95
NUP54-212ENST00000513248 PRR14Q9BWN1 585 aa9.1□□□□□ -0.95
NUP54-212ENST00000513248 GGCXP38435 758 aa9.09□□□□□ -0.95
NUP54-212ENST00000513248 TRAF7Q6Q0C0 670 aa9.08□□□□□ -0.96
NUP54-212ENST00000513248 TMUB1Q9BVT8 246 aa9.08□□□□□ -0.96
NUP54-212ENST00000513248 LCE2BO14633 110 aa9.06□□□□□ -0.96
NUP54-212ENST00000513248 ZPR1O75312 459 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms