RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 DPYSL4O14531 572 aa9.12□□□□□ -0.95
NUP54-208ENST00000508604 ANKK1Q8NFD2 765 aa9.12□□□□□ -0.95
NUP54-208ENST00000508604 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.12□□□□□ -0.95
NUP54-208ENST00000508604 PROX2Q3B8N5 592 aa9.1□□□□□ -0.95
NUP54-208ENST00000508604 LAPTM4BQ86VI4 370 aa9.1□□□□□ -0.95
NUP54-208ENST00000508604 SPRYD3Q8NCJ5 442 aa9.1□□□□□ -0.95
NUP54-208ENST00000508604 COL9A1P20849 921 aa9.09□□□□□ -0.95
NUP54-208ENST00000508604 ONECUT3O60422 494 aaPredicted RBP9.08□□□□□ -0.96
NUP54-208ENST00000508604 C6orf132Q5T0Z8 1188 aa9.08□□□□□ -0.96
NUP54-208ENST00000508604 IFFO2Q5TF58 517 aa9.08□□□□□ -0.96
NUP54-208ENST00000508604 KIAA1468Q9P260 1216 aa9.07□□□□□ -0.96
NUP54-208ENST00000508604 RGS20O76081 388 aa9.06□□□□□ -0.96
NUP54-208ENST00000508604 DDX12PQ92771 950 aa9.06□□□□□ -0.96
NUP54-208ENST00000508604 RBM33Q96EV2 1170 aaKnown RBP9.06□□□□□ -0.96
NUP54-208ENST00000508604 AMER1Q5JTC6 1135 aaPredicted RBP9.05□□□□□ -0.96
NUP54-208ENST00000508604 WDR70Q9NW82 654 aa9.04□□□□□ -0.96
NUP54-208ENST00000508604 SPDYE16A6NNV3 312 aaPredicted RBP9.04□□□□□ -0.96
NUP54-208ENST00000508604 NYAP1Q6ZVC0 841 aa9.04□□□□□ -0.96
NUP54-208ENST00000508604 TRIM6-TRIM34B2RNG4 842 aa9.03□□□□□ -0.96
NUP54-208ENST00000508604 NBR1Q14596 966 aa9.03□□□□□ -0.96
NUP54-208ENST00000508604 ZFRQ96KR1 1074 aaKnown RBP9.03□□□□□ -0.96
NUP54-208ENST00000508604 SOWAHBA6NEL2 793 aa9.02□□□□□ -0.97
NUP54-208ENST00000508604 A0A0G2JS52 829 aa9.01□□□□□ -0.97
NUP54-208ENST00000508604 MAP3K7O43318 606 aa9.01□□□□□ -0.97
NUP54-208ENST00000508604 BCAMP50895 628 aa9.01□□□□□ -0.97
NUP54-208ENST00000508604 PDIA6Q15084 440 aa9□□□□□ -0.97
NUP54-208ENST00000508604 SEPT9Q9UHD8 586 aaPredicted RBP9□□□□□ -0.97
NUP54-208ENST00000508604 EN1Q05925 392 aaPredicted RBP9□□□□□ -0.97
NUP54-208ENST00000508604 E2F4Q16254 413 aa9□□□□□ -0.97
NUP54-208ENST00000508604 FAM98CQ17RN3 349 aaKnown RBP9□□□□□ -0.97
NUP54-208ENST00000508604 PACS2Q86VP3 889 aa9□□□□□ -0.97
NUP54-208ENST00000508604 CFAP44Q96MT7 982 aa8.99□□□□□ -0.97
NUP54-208ENST00000508604 LRCH3Q96II8 777 aa8.98□□□□□ -0.97
NUP54-208ENST00000508604 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.98□□□□□ -0.97
NUP54-208ENST00000508604 PAXIP1Q6ZW49 1069 aaPredicted RBP8.97□□□□□ -0.97
NUP54-208ENST00000508604 ITGBL1O95965 494 aaPredicted RBP8.96□□□□□ -0.98
NUP54-208ENST00000508604 CERKQ8TCT0 537 aa8.96□□□□□ -0.98
NUP54-208ENST00000508604 IRX2Q9BZI1 471 aaPredicted RBP8.95□□□□□ -0.98
NUP54-208ENST00000508604 WBP1LQ9NX94 342 aa8.95□□□□□ -0.98
NUP54-208ENST00000508604 TSR3Q9UJK0 312 aaKnown RBP8.95□□□□□ -0.98
NUP54-208ENST00000508604 KCNC4Q03721 635 aa8.94□□□□□ -0.98
NUP54-208ENST00000508604 TSR1Q2NL82 804 aaKnown RBP8.94□□□□□ -0.98
NUP54-208ENST00000508604 GRXCR2A6NFK2 248 aa8.94□□□□□ -0.98
NUP54-208ENST00000508604 HPS5Q9UPZ3 1129 aa8.94□□□□□ -0.98
NUP54-208ENST00000508604 TSKSQ9UJT2 592 aa8.92□□□□□ -0.98
NUP54-208ENST00000508604 ARIH1Q9Y4X5 557 aaPredicted RBP8.92□□□□□ -0.98
NUP54-208ENST00000508604 CDCA7LQ96GN5 454 aa8.91□□□□□ -0.98
NUP54-208ENST00000508604 HDGFP51858 240 aaKnown RBP8.91□□□□□ -0.98
NUP54-208ENST00000508604 PRSS12P56730 875 aa8.91□□□□□ -0.98
NUP54-208ENST00000508604 PPP4CP60510 307 aa8.91□□□□□ -0.98
NUP54-208ENST00000508604 NBPF26B4DH59 902 aa8.9□□□□□ -0.98
NUP54-208ENST00000508604 RTN4Q9NQC3 1192 aaKnown RBP8.88□□□□□ -0.99
NUP54-208ENST00000508604 PNMA3Q9UL41 463 aa8.87□□□□□ -0.99
NUP54-208ENST00000508604 TATDN2Q93075 761 aa8.86□□□□□ -0.99
NUP54-208ENST00000508604 SMAPO00193 183 aa8.85□□□□□ -0.99
NUP54-208ENST00000508604 SAMD7Q7Z3H4 446 aa8.85□□□□□ -0.99
NUP54-208ENST00000508604 NECTIN2Q92692 538 aa8.84□□□□□ -0.99
NUP54-208ENST00000508604 RBM27Q9P2N5 1060 aaKnown RBP8.84□□□□□ -0.99
NUP54-208ENST00000508604 RNF40O75150 1001 aa8.83□□□□□ -1
NUP54-208ENST00000508604 OSBPP22059 807 aa8.83□□□□□ -1
NUP54-208ENST00000508604 SLC4A3P48751 1232 aa8.81□□□□□ -1
NUP54-208ENST00000508604 NUDT18Q6ZVK8 323 aa8.81□□□□□ -1
NUP54-208ENST00000508604 PRIM1P49642 420 aaKnown RBP8.81□□□□□ -1
NUP54-208ENST00000508604 CDHR5Q9HBB8 845 aa8.81□□□□□ -1
NUP54-208ENST00000508604 FAM198AQ9UFP1 575 aa8.81□□□□□ -1
NUP54-208ENST00000508604 IL21Q9HBE4 155 aa8.78□□□□□ -1
NUP54-208ENST00000508604 Q6ZNB5 142 aa8.77□□□□□ -1.01
NUP54-208ENST00000508604 TJAP1Q5JTD0 557 aa8.76□□□□□ -1.01
NUP54-208ENST00000508604 SLF2Q8IX21 1173 aa8.76□□□□□ -1.01
NUP54-208ENST00000508604 MTRQ99707 1265 aa8.76□□□□□ -1.01
NUP54-208ENST00000508604 LAPTM4AQ15012 233 aa8.75□□□□□ -1.01
NUP54-208ENST00000508604 PADI6Q6TGC4 694 aa8.75□□□□□ -1.01
NUP54-208ENST00000508604 ARHGEF1Q92888 912 aaKnown RBP8.75□□□□□ -1.01
NUP54-208ENST00000508604 C3orf80F5H4A9 247 aa8.74□□□□□ -1.01
NUP54-208ENST00000508604 SWT1Q5T5J6 900 aaKnown RBP8.72□□□□□ -1.01
NUP54-208ENST00000508604 TTC13Q8NBP0 860 aa8.72□□□□□ -1.01
NUP54-208ENST00000508604 PRR14Q9BWN1 585 aa8.72□□□□□ -1.01
NUP54-208ENST00000508604 GGCXP38435 758 aa8.72□□□□□ -1.01
NUP54-208ENST00000508604 NPDC1Q9NQX5 325 aaPredicted RBP8.72□□□□□ -1.01
NUP54-208ENST00000508604 APLP1P51693 650 aa8.71□□□□□ -1.02
NUP54-208ENST00000508604 PPP1R18Q6NYC8 613 aa8.7□□□□□ -1.02
NUP54-208ENST00000508604 PRKD2Q9BZL6 878 aa8.69□□□□□ -1.02
NUP54-208ENST00000508604 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.69□□□□□ -1.02
NUP54-208ENST00000508604 TSHZ2Q9NRE2 1034 aa8.69□□□□□ -1.02
NUP54-208ENST00000508604 GFRA3O60609 400 aa8.69□□□□□ -1.02
NUP54-208ENST00000508604 P3H3Q8IVL6 736 aa8.68□□□□□ -1.02
NUP54-208ENST00000508604 ZNF516Q92618 1163 aa8.68□□□□□ -1.02
NUP54-208ENST00000508604 MLLT3P42568 568 aaPredicted RBP8.67□□□□□ -1.02
NUP54-208ENST00000508604 COPS2P61201 443 aa8.67□□□□□ -1.02
NUP54-208ENST00000508604 RBM46Q8TBY0 533 aaKnown RBP8.67□□□□□ -1.02
NUP54-208ENST00000508604 KCNV2Q8TDN2 545 aa8.67□□□□□ -1.02
NUP54-208ENST00000508604 EYA1Q99502 592 aa8.67□□□□□ -1.02
NUP54-208ENST00000508604 V9GY48 417 aaPredicted RBP8.67□□□□□ -1.02
NUP54-208ENST00000508604 NUTM2FA1L443 756 aa8.65□□□□□ -1.02
NUP54-208ENST00000508604 DNAJB2P25686 324 aa8.65□□□□□ -1.02
NUP54-208ENST00000508604 PTGDRQ13258 359 aa8.65□□□□□ -1.03
NUP54-208ENST00000508604 PCDHB3Q9Y5E6 796 aa8.65□□□□□ -1.03
NUP54-208ENST00000508604 ZPR1O75312 459 aa8.62□□□□□ -1.03
NUP54-208ENST00000508604 KMT5BQ4FZB7 885 aa8.62□□□□□ -1.03
NUP54-208ENST00000508604 TMUB1Q9BVT8 246 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms