RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 EPAS1Q99814 870 aa9.05□□□□□ -0.96
HMGB1P29-201ENST00000505659 SEMA3EO15041 775 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 COL9A1P20849 921 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 PTPREP23469 700 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 TSR1Q2NL82 804 aaKnown RBP9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
HMGB1P29-201ENST00000505659 OSBPP22059 807 aa9.03□□□□□ -0.96
HMGB1P29-201ENST00000505659 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P29-201ENST00000505659 MAP3K7O43318 606 aa9.02□□□□□ -0.97
HMGB1P29-201ENST00000505659 ADGRD1Q6QNK2 874 aa9.02□□□□□ -0.97
HMGB1P29-201ENST00000505659 MMRN1Q13201 1228 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 C6orf132Q5T0Z8 1188 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 KCNH8Q96L42 1107 aa9.01□□□□□ -0.97
HMGB1P29-201ENST00000505659 ZBED2Q9BTP6 218 aa9□□□□□ -0.97
HMGB1P29-201ENST00000505659 CDHR5Q9HBB8 845 aa9□□□□□ -0.97
HMGB1P29-201ENST00000505659 PPP1R3GB7ZBB8 358 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 PROX2Q3B8N5 592 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 VPS9D1Q9Y2B5 631 aa8.99□□□□□ -0.97
HMGB1P29-201ENST00000505659 TK2O00142 265 aa8.97□□□□□ -0.97
HMGB1P29-201ENST00000505659 HRO43593 1189 aa8.96□□□□□ -0.98
HMGB1P29-201ENST00000505659 TESPA1A2RU30 521 aaPredicted RBP8.95□□□□□ -0.98
HMGB1P29-201ENST00000505659 MYT1LQ9UL68 1186 aa8.95□□□□□ -0.98
HMGB1P29-201ENST00000505659 SLC4A5Q9BY07 1137 aa8.94□□□□□ -0.98
HMGB1P29-201ENST00000505659 RNF166Q96A37 237 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 NPDC1Q9NQX5 325 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 FAM198AQ9UFP1 575 aa8.91□□□□□ -0.98
HMGB1P29-201ENST00000505659 BHMG1C9JSJ3 638 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 RBM26Q5T8P6 1007 aaKnown RBP8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 TSKSQ9UJT2 592 aa8.9□□□□□ -0.98
HMGB1P29-201ENST00000505659 TRIM6-TRIM34B2RNG4 842 aa8.89□□□□□ -0.99
HMGB1P29-201ENST00000505659 KIAA1468Q9P260 1216 aa8.89□□□□□ -0.99
HMGB1P29-201ENST00000505659 NUTM2FA1L443 756 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 C3orf80F5H4A9 247 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 CDCA7LQ96GN5 454 aa8.88□□□□□ -0.99
HMGB1P29-201ENST00000505659 SLC24A1O60721 1099 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 PRSS12P56730 875 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 SEPT9Q9UHD8 586 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 RABGEF1Q9UJ41 708 aa8.87□□□□□ -0.99
HMGB1P29-201ENST00000505659 SMAPO00193 183 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 PTGDRQ13258 359 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 PADI6Q6TGC4 694 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 MRPL50Q8N5N7 158 aaKnown RBP8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 KCTD12Q96CX2 325 aaKnown RBP8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 STAC3Q96MF2 364 aa8.85□□□□□ -0.99
HMGB1P29-201ENST00000505659 CERKQ8TCT0 537 aa8.84□□□□□ -0.99
HMGB1P29-201ENST00000505659 NBPF3Q9H094 633 aa8.84□□□□□ -0.99
HMGB1P29-201ENST00000505659 ONECUT3O60422 494 aaPredicted RBP8.82□□□□□ -1
HMGB1P29-201ENST00000505659 SMYD5Q6GMV2 418 aa8.82□□□□□ -1
HMGB1P29-201ENST00000505659 GPR37O15354 613 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 PACS2Q86VP3 889 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 TTC13Q8NBP0 860 aa8.81□□□□□ -1
HMGB1P29-201ENST00000505659 GOLGA8CPA6NN73 597 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FCHSD2O94868 740 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FAM161AQ3B820 660 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 NUDT18Q6ZVK8 323 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 WNT2BQ93097 391 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 RBM27Q9P2N5 1060 aaKnown RBP8.79□□□□□ -1
HMGB1P29-201ENST00000505659 PNMA3Q9UL41 463 aa8.79□□□□□ -1
HMGB1P29-201ENST00000505659 FECHP22830 423 aa8.78□□□□□ -1
HMGB1P29-201ENST00000505659 TATDN2Q93075 761 aa8.78□□□□□ -1
HMGB1P29-201ENST00000505659 ZFRQ96KR1 1074 aaKnown RBP8.78□□□□□ -1
HMGB1P29-201ENST00000505659 NBPF26B4DH59 902 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 BCAMP50895 628 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 FAM98CQ17RN3 349 aaKnown RBP8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 THSD4Q6ZMP0 1018 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 LAPTM4BQ86VI4 370 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 GPIHBP1Q8IV16 184 aa8.77□□□□□ -1.01
HMGB1P29-201ENST00000505659 PTPN5P54829 565 aa8.76□□□□□ -1.01
HMGB1P29-201ENST00000505659 ANKK1Q8NFD2 765 aa8.75□□□□□ -1.01
HMGB1P29-201ENST00000505659 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.74□□□□□ -1.01
HMGB1P29-201ENST00000505659 HIC1Q14526 733 aa8.73□□□□□ -1.01
HMGB1P29-201ENST00000505659 ADGRG1Q9Y653 693 aa8.73□□□□□ -1.01
HMGB1P29-201ENST00000505659 TULP1O00294 542 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 GNPATO15228 680 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 LMOD2Q6P5Q4 547 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 SAMD7Q7Z3H4 446 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 EYA1Q99502 592 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 HCSTQ9UBK5 93 aa8.72□□□□□ -1.01
HMGB1P29-201ENST00000505659 SOWAHBA6NEL2 793 aa8.71□□□□□ -1.02
HMGB1P29-201ENST00000505659 LRCH3Q96II8 777 aa8.7□□□□□ -1.02
HMGB1P29-201ENST00000505659 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.7□□□□□ -1.02
HMGB1P29-201ENST00000505659 SWT1Q5T5J6 900 aaKnown RBP8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 WBP1LQ9NX94 342 aa8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 HPS5Q9UPZ3 1129 aa8.68□□□□□ -1.02
HMGB1P29-201ENST00000505659 RNF40O75150 1001 aa8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 RBM46Q8TBY0 533 aaKnown RBP8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 NLRP7Q8WX94 980 aa8.67□□□□□ -1.02
HMGB1P29-201ENST00000505659 RCCD1A6NED2 376 aa8.66□□□□□ -1.02
HMGB1P29-201ENST00000505659 PXYLP1Q8TE99 480 aa8.66□□□□□ -1.02
HMGB1P29-201ENST00000505659 METTL3Q86U44 580 aaKnown RBP8.65□□□□□ -1.02
HMGB1P29-201ENST00000505659 PHOX2BQ99453 314 aa8.65□□□□□ -1.02
HMGB1P29-201ENST00000505659 TSR3Q9UJK0 312 aaKnown RBP8.64□□□□□ -1.03
HMGB1P29-201ENST00000505659 DNAJB2P25686 324 aa8.63□□□□□ -1.03
HMGB1P29-201ENST00000505659 TMEM134Q9H6X4 195 aa8.63□□□□□ -1.03
HMGB1P29-201ENST00000505659 ZC3H15Q8WU90 426 aaKnown RBP8.62□□□□□ -1.03
HMGB1P29-201ENST00000505659 OATP04181 439 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 PPP4CP60510 307 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 MAP2K5Q13163 448 aa8.61□□□□□ -1.03
HMGB1P29-201ENST00000505659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.59□□□□□ -1.03
HMGB1P29-201ENST00000505659 HDGFP51858 240 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms