RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 IQGAP3Q86VI3 1631 aa15.47■□□□□ 0.07
TPM3-217ENST00000504663 CCER1Q8TC90 406 aaPredicted RBP15.47■□□□□ 0.07
TPM3-217ENST00000504663 RNF17Q9BXT8 1623 aaKnown RBP15.46■□□□□ 0.06
TPM3-217ENST00000504663 VWDEQ8N2E2 1590 aa15.45■□□□□ 0.06
TPM3-217ENST00000504663 SLC24A1O60721 1099 aa15.45■□□□□ 0.06
TPM3-217ENST00000504663 SIGLEC1Q9BZZ2 1709 aa15.45■□□□□ 0.06
TPM3-217ENST00000504663 CLSPNQ9HAW4 1339 aa15.44■□□□□ 0.06
TPM3-217ENST00000504663 SLC4A1APQ9BWU0 796 aaKnown RBP15.44■□□□□ 0.06
TPM3-217ENST00000504663 PRDM15P57071 1507 aaPredicted RBP15.43■□□□□ 0.06
TPM3-217ENST00000504663 RAPGEF3O95398 923 aa15.43■□□□□ 0.06
TPM3-217ENST00000504663 ARHGEF40Q8TER5 1519 aa15.43■□□□□ 0.06
TPM3-217ENST00000504663 YEATS2Q9ULM3 1422 aa15.43■□□□□ 0.06
TPM3-217ENST00000504663 REREQ9P2R6 1566 aa15.42■□□□□ 0.06
TPM3-217ENST00000504663 FAM135AQ9P2D6 1515 aa15.42■□□□□ 0.06
TPM3-217ENST00000504663 A2MP01023 1474 aa15.41■□□□□ 0.06
TPM3-217ENST00000504663 DHX29Q7Z478 1369 aaKnown RBP15.4■□□□□ 0.06
TPM3-217ENST00000504663 ACIN1Q9UKV3 1341 aaKnown RBP15.37■□□□□ 0.05
TPM3-217ENST00000504663 E9PCH4 1651 aa15.35■□□□□ 0.05
TPM3-217ENST00000504663 TET3O43151 1660 aa15.35■□□□□ 0.05
TPM3-217ENST00000504663 MPHOSPH9Q99550 1183 aa15.35■□□□□ 0.05
TPM3-217ENST00000504663 CEP152O94986 1710 aa15.34■□□□□ 0.05
TPM3-217ENST00000504663 LMTK2Q8IWU2 1503 aa15.34■□□□□ 0.05
TPM3-217ENST00000504663 NUP155O75694 1391 aa15.34■□□□□ 0.05
TPM3-217ENST00000504663 ANKRD30BQ9BXX2 1392 aa15.34■□□□□ 0.05
TPM3-217ENST00000504663 AGLP35573 1532 aa15.33■□□□□ 0.05
TPM3-217ENST00000504663 ZEB1P37275 1124 aaPredicted RBP15.33■□□□□ 0.04
TPM3-217ENST00000504663 TRIM52Q96A61 297 aa15.32■□□□□ 0.04
TPM3-217ENST00000504663 ATP10AO60312 1499 aa15.32■□□□□ 0.04
TPM3-217ENST00000504663 PLA2R1Q13018 1463 aa15.3■□□□□ 0.04
TPM3-217ENST00000504663 EFCAB6Q5THR3 1501 aa15.3■□□□□ 0.04
TPM3-217ENST00000504663 ABCC3O15438 1527 aa15.29■□□□□ 0.04
TPM3-217ENST00000504663 PIAS4Q8N2W9 510 aaPredicted RBP15.29■□□□□ 0.04
TPM3-217ENST00000504663 SIN3AQ96ST3 1273 aa15.29■□□□□ 0.04
TPM3-217ENST00000504663 ZC3H13Q5T200 1668 aaKnown RBP15.28■□□□□ 0.04
TPM3-217ENST00000504663 RPRD2Q5VT52 1461 aaKnown RBP15.27■□□□□ 0.04
TPM3-217ENST00000504663 SPHKAPQ2M3C7 1700 aa15.27■□□□□ 0.04
TPM3-217ENST00000504663 CAMSAP1Q5T5Y3 1602 aa15.27■□□□□ 0.03
TPM3-217ENST00000504663 KIF3BO15066 747 aa15.25■□□□□ 0.03
TPM3-217ENST00000504663 PKD2Q13563 968 aa15.25■□□□□ 0.03
TPM3-217ENST00000504663 TRPM2O94759 1503 aa15.24■□□□□ 0.03
TPM3-217ENST00000504663 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
TPM3-217ENST00000504663 PTPRTO14522 1441 aa15.23■□□□□ 0.03
TPM3-217ENST00000504663 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.031e-10■■■■□ 22.5
TPM3-217ENST00000504663 MYT1LQ9UL68 1186 aa15.21■□□□□ 0.03
TPM3-217ENST00000504663 CLTCL1P53675 1640 aa15.21■□□□□ 0.02
TPM3-217ENST00000504663 NPATQ14207 1427 aa15.19■□□□□ 0.02
TPM3-217ENST00000504663 KANK1Q14678 1352 aa15.18■□□□□ 0.02
TPM3-217ENST00000504663 CLTCQ00610 1675 aaKnown RBP15.18■□□□□ 0.02
TPM3-217ENST00000504663 ARHGAP31Q2M1Z3 1444 aa15.17■□□□□ 0.02
TPM3-217ENST00000504663 SYNMO15061 1565 aa15.17■□□□□ 0.02
TPM3-217ENST00000504663 PIK3C2BO00750 1634 aa15.17■□□□□ 0.02
TPM3-217ENST00000504663 UGGT1Q9NYU2 1555 aa15.16■□□□□ 0.02
TPM3-217ENST00000504663 MROH2AA6NES4 1674 aa15.16■□□□□ 0.02
TPM3-217ENST00000504663 PREX1Q8TCU6 1659 aa15.16■□□□□ 0.02
TPM3-217ENST00000504663 NEURL4Q96JN8 1562 aa15.15■□□□□ 0.02
TPM3-217ENST00000504663 NEUROD1Q13562 356 aa15.15■□□□□ 0.02
TPM3-217ENST00000504663 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
TPM3-217ENST00000504663 NOS1P29475 1434 aa15.15■□□□□ 0.02
TPM3-217ENST00000504663 SPATA31E1Q6ZUB1 1445 aa15.13■□□□□ 0.01
TPM3-217ENST00000504663 GGT6Q6P531 493 aa15.12■□□□□ 0.01
TPM3-217ENST00000504663 IFT172Q9UG01 1749 aa15.12■□□□□ 0.01
TPM3-217ENST00000504663 CCDC144AA2RUR9 1427 aa15.11■□□□□ 0.01
TPM3-217ENST00000504663 ADGRB3O60242 1522 aa15.11■□□□□ 0.01
TPM3-217ENST00000504663 TONSLQ96HA7 1378 aa15.11■□□□□ 0.01
TPM3-217ENST00000504663 CNTLNQ9NXG0 1405 aa15.1■□□□□ 0.01
TPM3-217ENST00000504663 SPATA31D1Q6ZQQ2 1576 aa15.1■□□□□ 0.01
TPM3-217ENST00000504663 PPP1R15AO75807 674 aaPredicted RBP15.09■□□□□ 0.01
TPM3-217ENST00000504663 CFAP65Q6ZU64 1925 aaKnown RBP15.09■□□□□ 0.01
TPM3-217ENST00000504663 ERVK-7P63135 1459 aa15.08■□□□□ 0.01
TPM3-217ENST00000504663 L3MBTL2Q969R5 705 aa15.08■□□□□ 0
TPM3-217ENST00000504663 FER1L4A9Z1Z3 1794 aa15.08■□□□□ 0
TPM3-217ENST00000504663 KIF1BO60333 1816 aa15.08■□□□□ 0
TPM3-217ENST00000504663 UHRF1BP1Q6BDS2 1440 aa15.07■□□□□ 0
TPM3-217ENST00000504663 WASHC2CQ9Y4E1 1318 aa15.06■□□□□ 0
TPM3-217ENST00000504663 ADAMTSL3P82987 1691 aa15.05■□□□□ -0
TPM3-217ENST00000504663 C3P01024 1663 aa15.04■□□□□ -0
TPM3-217ENST00000504663 MADDQ8WXG6 1647 aa15.04■□□□□ -0
TPM3-217ENST00000504663 MYO5BQ9ULV0 1848 aa15.03■□□□□ -0
TPM3-217ENST00000504663 TMEM131LA2VDJ0 1609 aa15.03■□□□□ -0
TPM3-217ENST00000504663 TRPM1Q7Z4N2 1603 aa15.03■□□□□ -0
TPM3-217ENST00000504663 NBPF8Q3BBV2 869 aa15.02■□□□□ -0
TPM3-217ENST00000504663 PPLO60437 1756 aa15.02□□□□□ -0.01
TPM3-217ENST00000504663 RALGAPBQ86X10 1494 aa15□□□□□ -0.01
TPM3-217ENST00000504663 PRAG1Q86YV5 1406 aa15□□□□□ -0.01
TPM3-217ENST00000504663 MLECQ14165 292 aa14.99□□□□□ -0.01
TPM3-217ENST00000504663 MYOM2P54296 1465 aa14.99□□□□□ -0.01
TPM3-217ENST00000504663 NRXN1Q9ULB1 1477 aa14.99□□□□□ -0.01
TPM3-217ENST00000504663 NEXMIFQ5QGS0 1516 aa14.98□□□□□ -0.01
TPM3-217ENST00000504663 RIMS1Q86UR5 1692 aaKnown RBP14.98□□□□□ -0.01
TPM3-217ENST00000504663 ZMYM3Q14202 1370 aa14.98□□□□□ -0.01
TPM3-217ENST00000504663 KDM5AP29375 1690 aaKnown RBP14.97□□□□□ -0.01
TPM3-217ENST00000504663 LAMC1P11047 1609 aa14.96□□□□□ -0.01
TPM3-217ENST00000504663 FBXO31Q5XUX0 539 aaPredicted RBP14.96□□□□□ -0.01
TPM3-217ENST00000504663 PPP4R3CPQ6ZMV5 832 aa14.96□□□□□ -0.01
TPM3-217ENST00000504663 KIAA1210Q9ULL0 1709 aa14.95□□□□□ -0.02
TPM3-217ENST00000504663 ARID4BQ4LE39 1312 aaPredicted RBP14.93□□□□□ -0.02
TPM3-217ENST00000504663 UBR1Q8IWV7 1749 aa14.93□□□□□ -0.02
TPM3-217ENST00000504663 AMER1Q5JTC6 1135 aaPredicted RBP14.93□□□□□ -0.02
TPM3-217ENST00000504663 RTN4Q9NQC3 1192 aaKnown RBP14.93□□□□□ -0.02
TPM3-217ENST00000504663 MSH5O43196 834 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms