RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 ANKRD30AQ9BXX3 1397 aa9.95□□□□□ -0.82
USP39-219ENST00000496047 ABCC5O15440 1437 aa9.95□□□□□ -0.82
USP39-219ENST00000496047 ARHGAP5Q13017 1502 aa9.95□□□□□ -0.82
USP39-219ENST00000496047 MAST1Q9Y2H9 1570 aa9.95□□□□□ -0.82
USP39-219ENST00000496047 KDM6BO15054 1643 aa9.94□□□□□ -0.82
USP39-219ENST00000496047 SAMD9LQ8IVG5 1584 aa9.94□□□□□ -0.82
USP39-219ENST00000496047 CCDC141Q6ZP82 1450 aa9.93□□□□□ -0.82
USP39-219ENST00000496047 TRIM52Q96A61 297 aa9.93□□□□□ -0.82
USP39-219ENST00000496047 FARP1Q9Y4F1 1045 aaPredicted RBP9.93□□□□□ -0.82
USP39-219ENST00000496047 PLXNC1O60486 1568 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 HECW2Q9P2P5 1572 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP39-219ENST00000496047 RRP7BPQ9NSQ0 103 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 CHIC2Q9UKJ5 165 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 POLR1AO95602 1720 aaPredicted RBP9.92□□□□□ -0.82
USP39-219ENST00000496047 CFAP74Q9C0B2 1584 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 KDM5BQ9UGL1 1544 aa9.92□□□□□ -0.82
USP39-219ENST00000496047 RSPH4AQ5TD94 716 aa9.91□□□□□ -0.82
USP39-219ENST00000496047 ZNF777Q9ULD5 760 aaPredicted RBP9.91□□□□□ -0.82
USP39-219ENST00000496047 ARAP3Q8WWN8 1544 aa9.91□□□□□ -0.82
USP39-219ENST00000496047 C9orf84Q5VXU9 1444 aa9.9□□□□□ -0.82
USP39-219ENST00000496047 DISP3Q9P2K9 1392 aa9.9□□□□□ -0.82
USP39-219ENST00000496047 NEUROD1Q13562 356 aa9.9□□□□□ -0.82
USP39-219ENST00000496047 SYCP2Q9BX26 1530 aa9.89□□□□□ -0.83
USP39-219ENST00000496047 KDM5DQ9BY66 1539 aa9.89□□□□□ -0.83
USP39-219ENST00000496047 TSPY4P0CV99 314 aa9.89□□□□□ -0.83
USP39-219ENST00000496047 TSPY10P0CW01 314 aa9.89□□□□□ -0.83
USP39-219ENST00000496047 RTN4Q9NQC3 1192 aaKnown RBP9.88□□□□□ -0.83
USP39-219ENST00000496047 NCOA1Q15788 1441 aa9.88□□□□□ -0.83
USP39-219ENST00000496047 ABCA9Q8IUA7 1624 aa9.87□□□□□ -0.83
USP39-219ENST00000496047 CENPBP07199 599 aaPredicted RBP9.87□□□□□ -0.83
USP39-219ENST00000496047 POTEIP0CG38 1075 aa9.87□□□□□ -0.83
USP39-219ENST00000496047 UNC13BO14795 1591 aa9.87□□□□□ -0.83
USP39-219ENST00000496047 ABCC1P33527 1531 aa9.87□□□□□ -0.83
USP39-219ENST00000496047 ANKRD50Q9ULJ7 1429 aa9.86□□□□□ -0.83
USP39-219ENST00000496047 WDR7Q9Y4E6 1490 aa9.85□□□□□ -0.83
USP39-219ENST00000496047 KIAA1107Q9UPP5 1409 aa9.85□□□□□ -0.83
USP39-219ENST00000496047 ZNF644Q9H582 1327 aaPredicted RBP9.84□□□□□ -0.83
USP39-219ENST00000496047 DUOX2Q9NRD8 1548 aa9.84□□□□□ -0.83
USP39-219ENST00000496047 DCBLD2Q96PD2 775 aa9.84□□□□□ -0.83
USP39-219ENST00000496047 SIN3AQ96ST3 1273 aa9.84□□□□□ -0.83
USP39-219ENST00000496047 IQGAP3Q86VI3 1631 aa9.84□□□□□ -0.83
USP39-219ENST00000496047 VASPP50552 380 aaPredicted RBP9.83□□□□□ -0.84
USP39-219ENST00000496047 MPHOSPH9Q99550 1183 aa9.83□□□□□ -0.84
USP39-219ENST00000496047 STAG3Q9UJ98 1225 aa9.83□□□□□ -0.84
USP39-219ENST00000496047 KIF15Q9NS87 1388 aa9.83□□□□□ -0.84
USP39-219ENST00000496047 RPRD2Q5VT52 1461 aaKnown RBP9.83□□□□□ -0.84
USP39-219ENST00000496047 PLCH2O75038 1416 aa9.82□□□□□ -0.84
USP39-219ENST00000496047 CLCN6P51797 869 aa9.82□□□□□ -0.84
USP39-219ENST00000496047 MBD5Q9P267 1494 aa9.82□□□□□ -0.84
USP39-219ENST00000496047 EIF2AK4Q9P2K8 1649 aaKnown RBP9.82□□□□□ -0.84
USP39-219ENST00000496047 PZPP20742 1482 aa9.81□□□□□ -0.84
USP39-219ENST00000496047 PPP1R15AO75807 674 aaPredicted RBP9.81□□□□□ -0.84
USP39-219ENST00000496047 ERBINQ96RT1 1412 aa9.81□□□□□ -0.84
USP39-219ENST00000496047 EFCAB2Q5VUJ9 269 aa9.8□□□□□ -0.84
USP39-219ENST00000496047 NPM1P06748 294 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP39-219ENST00000496047 ZRANB1Q9UGI0 708 aa9.79□□□□□ -0.84
USP39-219ENST00000496047 INO80Q9ULG1 1556 aaPredicted RBP9.79□□□□□ -0.84
USP39-219ENST00000496047 DENND4BO75064 1496 aaPredicted RBP9.79□□□□□ -0.84
USP39-219ENST00000496047 ARHGEF12Q9NZN5 1544 aa9.78□□□□□ -0.84
USP39-219ENST00000496047 FAM135AQ9P2D6 1515 aa9.78□□□□□ -0.84
USP39-219ENST00000496047 SPHKAPQ2M3C7 1700 aa9.78□□□□□ -0.84
USP39-219ENST00000496047 ADGRL1O94910 1474 aa9.78□□□□□ -0.84
USP39-219ENST00000496047 ANKRD30BQ9BXX2 1392 aa9.77□□□□□ -0.84
USP39-219ENST00000496047 CEP152O94986 1710 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 HNRNPMP52272 730 aaKnown RBP eCLIP9.77□□□□□ -0.85
USP39-219ENST00000496047 KCNH8Q96L42 1107 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 DEPDC5O75140 1603 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 TEX14Q8IWB6 1497 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 ATP7AQ04656 1500 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 ZFYVE16Q7Z3T8 1539 aa9.77□□□□□ -0.85
USP39-219ENST00000496047 NUP155O75694 1391 aa9.76□□□□□ -0.85
USP39-219ENST00000496047 RTEL1-TNFRSF6BF6WH68 1400 aa9.76□□□□□ -0.85
USP39-219ENST00000496047 FANCAO15360 1455 aa9.76□□□□□ -0.85
USP39-219ENST00000496047 TET3O43151 1660 aa9.76□□□□□ -0.85
USP39-219ENST00000496047 KIF1BO60333 1816 aa9.75□□□□□ -0.85
USP39-219ENST00000496047 ASXL2Q76L83 1435 aa9.75□□□□□ -0.85
USP39-219ENST00000496047 MAGI2Q86UL8 1455 aa9.75□□□□□ -0.85
USP39-219ENST00000496047 PLEKHG5O94827 1062 aa9.74□□□□□ -0.85
USP39-219ENST00000496047 FAM69CQ0P6D2 419 aa9.74□□□□□ -0.85
USP39-219ENST00000496047 ZNF579Q8NAF0 562 aaKnown RBP9.74□□□□□ -0.85
USP39-219ENST00000496047 PLSCR2Q9NRY7 297 aa9.74□□□□□ -0.85
USP39-219ENST00000496047 KIF13AQ9H1H9 1805 aa9.74□□□□□ -0.85
USP39-219ENST00000496047 PKD2Q13563 968 aa9.72□□□□□ -0.85
USP39-219ENST00000496047 ZNF518AQ6AHZ1 1483 aa9.72□□□□□ -0.85
USP39-219ENST00000496047 E9PCH4 1651 aa9.71□□□□□ -0.85
USP39-219ENST00000496047 KIDINS220Q9ULH0 1771 aa9.71□□□□□ -0.85
USP39-219ENST00000496047 EIF4G2P78344 907 aaKnown RBP eCLIP9.71□□□□□ -0.86
USP39-219ENST00000496047 MIER1Q8N108 512 aa9.71□□□□□ -0.86
USP39-219ENST00000496047 CREBZFQ9NS37 354 aa9.71□□□□□ -0.86
USP39-219ENST00000496047 SPAG9O60271 1321 aaKnown RBP9.71□□□□□ -0.86
USP39-219ENST00000496047 CCDC144AA2RUR9 1427 aa9.71□□□□□ -0.86
USP39-219ENST00000496047 LAMC1P11047 1609 aa9.71□□□□□ -0.86
USP39-219ENST00000496047 BCORL1Q5H9F3 1711 aa9.7□□□□□ -0.86
USP39-219ENST00000496047 KANK1Q14678 1352 aa9.7□□□□□ -0.86
USP39-219ENST00000496047 TRPM1Q7Z4N2 1603 aa9.7□□□□□ -0.86
USP39-219ENST00000496047 MAP3K4Q9Y6R4 1608 aa9.7□□□□□ -0.86
USP39-219ENST00000496047 KDM5CP41229 1560 aa9.69□□□□□ -0.86
USP39-219ENST00000496047 RALGAPBQ86X10 1494 aa9.69□□□□□ -0.86
USP39-219ENST00000496047 PLCD3Q8N3E9 789 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 169.8 ms