RNA–Protein interactions for RNA: ENST00000486837.1

LMBR1-218, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 576 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-218ENST00000486837 CDHR5Q9HBB8 845 aa10.72□□□□□ -0.69
LMBR1-218ENST00000486837 TSR1Q2NL82 804 aaKnown RBP10.71□□□□□ -0.69
LMBR1-218ENST00000486837 PPP4R3BQ5MIZ7 849 aa10.71□□□□□ -0.69
LMBR1-218ENST00000486837 NPDC1Q9NQX5 325 aaPredicted RBP10.71□□□□□ -0.69
LMBR1-218ENST00000486837 C6orf132Q5T0Z8 1188 aa10.7□□□□□ -0.7
LMBR1-218ENST00000486837 ADAM33Q9BZ11 813 aa10.69□□□□□ -0.7
LMBR1-218ENST00000486837 IRF6O14896 467 aa10.68□□□□□ -0.7
LMBR1-218ENST00000486837 BRPF1P55201 1214 aaPredicted RBP10.67□□□□□ -0.7
LMBR1-218ENST00000486837 BCL2L12Q9HB09 334 aa10.67□□□□□ -0.7
LMBR1-218ENST00000486837 TRIM66O15016 1216 aa10.66□□□□□ -0.7
LMBR1-218ENST00000486837 FECHP22830 423 aa10.66□□□□□ -0.7
LMBR1-218ENST00000486837 CCDC102AQ96A19 550 aa10.66□□□□□ -0.7
LMBR1-218ENST00000486837 RBM27Q9P2N5 1060 aaKnown RBP10.65□□□□□ -0.7
LMBR1-218ENST00000486837 NEUROD2Q15784 382 aa10.64□□□□□ -0.71
LMBR1-218ENST00000486837 PTPREP23469 700 aa10.62□□□□□ -0.71
LMBR1-218ENST00000486837 ST18O60284 1047 aa10.61□□□□□ -0.71
LMBR1-218ENST00000486837 PDE4DQ08499 809 aa10.61□□□□□ -0.71
LMBR1-218ENST00000486837 AMHR2Q16671 573 aa10.6□□□□□ -0.71
LMBR1-218ENST00000486837 PPP1R3GB7ZBB8 358 aa10.59□□□□□ -0.71
LMBR1-218ENST00000486837 PRSS12P56730 875 aa10.59□□□□□ -0.71
LMBR1-218ENST00000486837 TTC13Q8NBP0 860 aa10.59□□□□□ -0.71
LMBR1-218ENST00000486837 PADI6Q6TGC4 694 aa10.58□□□□□ -0.72
LMBR1-218ENST00000486837 ERBB3P21860 1342 aa10.58□□□□□ -0.72
LMBR1-218ENST00000486837 TMEM132AQ24JP5 1023 aa10.57□□□□□ -0.72
LMBR1-218ENST00000486837 CDCA7LQ96GN5 454 aa10.57□□□□□ -0.72
LMBR1-218ENST00000486837 KCNH8Q96L42 1107 aa10.57□□□□□ -0.72
LMBR1-218ENST00000486837 COL9A1P20849 921 aa10.56□□□□□ -0.72
LMBR1-218ENST00000486837 OATP04181 439 aa10.55□□□□□ -0.72
LMBR1-218ENST00000486837 EMP3P54852 163 aa10.55□□□□□ -0.72
LMBR1-218ENST00000486837 VARS2Q5ST30 1063 aaKnown RBP10.54□□□□□ -0.72
LMBR1-218ENST00000486837 DAXXQ9UER7 740 aaPredicted RBP10.54□□□□□ -0.72
LMBR1-218ENST00000486837 GPBP1L1Q9HC44 474 aaPredicted RBP10.53□□□□□ -0.72
LMBR1-218ENST00000486837 ADGRG1Q9Y653 693 aa10.53□□□□□ -0.72
LMBR1-218ENST00000486837 ONECUT3O60422 494 aaPredicted RBP10.52□□□□□ -0.73
LMBR1-218ENST00000486837 FAM163AQ96GL9 167 aaPredicted RBP10.52□□□□□ -0.73
LMBR1-218ENST00000486837 KCNK17Q96T54 332 aa10.52□□□□□ -0.73
LMBR1-218ENST00000486837 KDM4CQ9H3R0 1056 aa10.52□□□□□ -0.73
LMBR1-218ENST00000486837 PBX2P40425 430 aa10.51□□□□□ -0.73
LMBR1-218ENST00000486837 METTL3Q86U44 580 aaKnown RBP10.51□□□□□ -0.73
LMBR1-218ENST00000486837 PARP9Q8IXQ6 854 aa10.51□□□□□ -0.73
LMBR1-218ENST00000486837 PXYLP1Q8TE99 480 aa10.51□□□□□ -0.73
LMBR1-218ENST00000486837 TRIM6-TRIM34B2RNG4 842 aa10.5□□□□□ -0.73
LMBR1-218ENST00000486837 ARHGAP33O14559 1287 aa10.5□□□□□ -0.73
LMBR1-218ENST00000486837 RBM46Q8TBY0 533 aaKnown RBP10.5□□□□□ -0.73
LMBR1-218ENST00000486837 MARVELD3Q96A59 401 aa10.5□□□□□ -0.73
LMBR1-218ENST00000486837 ZNF687Q8N1G0 1237 aa10.49□□□□□ -0.73
LMBR1-218ENST00000486837 FAM198AQ9UFP1 575 aa10.49□□□□□ -0.73
LMBR1-218ENST00000486837 TSKSQ9UJT2 592 aa10.49□□□□□ -0.73
LMBR1-218ENST00000486837 FAM205CA6NFA0 338 aa10.48□□□□□ -0.73
LMBR1-218ENST00000486837 CLCN1P35523 988 aa10.48□□□□□ -0.73
LMBR1-218ENST00000486837 TTLL12Q14166 644 aaPredicted RBP10.48□□□□□ -0.73
LMBR1-218ENST00000486837 FAM161AQ3B820 660 aa10.48□□□□□ -0.73
LMBR1-218ENST00000486837 ZBED2Q9BTP6 218 aa10.48□□□□□ -0.73
LMBR1-218ENST00000486837 SLC4A5Q9BY07 1137 aa10.48□□□□□ -0.73
LMBR1-218ENST00000486837 NBPF26B4DH59 902 aa10.47□□□□□ -0.73
LMBR1-218ENST00000486837 PACS2Q86VP3 889 aa10.47□□□□□ -0.73
LMBR1-218ENST00000486837 PHOX2BQ99453 314 aa10.47□□□□□ -0.73
LMBR1-218ENST00000486837 TMUB1Q9BVT8 246 aa10.47□□□□□ -0.73
LMBR1-218ENST00000486837 PSEN2P49810 448 aa10.46□□□□□ -0.73
LMBR1-218ENST00000486837 POTEEQ6S8J3 1075 aa10.46□□□□□ -0.73
LMBR1-218ENST00000486837 GPCPD1Q9NPB8 672 aa10.46□□□□□ -0.73
LMBR1-218ENST00000486837 PROX2Q3B8N5 592 aa10.45□□□□□ -0.74
LMBR1-218ENST00000486837 HS3ST6Q96QI5 342 aa10.45□□□□□ -0.74
LMBR1-218ENST00000486837 EYA1Q99502 592 aa10.45□□□□□ -0.74
LMBR1-218ENST00000486837 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.44□□□□□ -0.74
LMBR1-218ENST00000486837 MDM2Q00987 491 aaPredicted RBP10.44□□□□□ -0.74
LMBR1-218ENST00000486837 LCE2DQ5TA82 110 aaPredicted RBP10.44□□□□□ -0.74
LMBR1-218ENST00000486837 GIGYF2Q6Y7W6 1299 aaKnown RBP10.44□□□□□ -0.74
LMBR1-218ENST00000486837 TATDN2Q93075 761 aa10.44□□□□□ -0.74
LMBR1-218ENST00000486837 DDRGK1Q96HY6 314 aa10.44□□□□□ -0.74
LMBR1-218ENST00000486837 NUDT18Q6ZVK8 323 aa10.43□□□□□ -0.74
LMBR1-218ENST00000486837 PNMA3Q9UL41 463 aa10.43□□□□□ -0.74
LMBR1-218ENST00000486837 REPIN1Q9BWE0 567 aaKnown RBP10.42□□□□□ -0.74
LMBR1-218ENST00000486837 RCCD1A6NED2 376 aa10.41□□□□□ -0.74
LMBR1-218ENST00000486837 DMRTA1Q5VZB9 504 aa10.41□□□□□ -0.74
LMBR1-218ENST00000486837 RABGEF1Q9UJ41 708 aa10.41□□□□□ -0.74
LMBR1-218ENST00000486837 AXIN2Q9Y2T1 843 aa10.41□□□□□ -0.74
LMBR1-218ENST00000486837 DNAJB2P25686 324 aa10.4□□□□□ -0.74
LMBR1-218ENST00000486837 IL27Q8NEV9 243 aa10.4□□□□□ -0.74
LMBR1-218ENST00000486837 FAM117AQ9C073 453 aa10.4□□□□□ -0.74
LMBR1-218ENST00000486837 KIAA1468Q9P260 1216 aa10.4□□□□□ -0.74
LMBR1-218ENST00000486837 POTEB3A0JP26 581 aa10.39□□□□□ -0.75
LMBR1-218ENST00000486837 C3orf80F5H4A9 247 aa10.39□□□□□ -0.75
LMBR1-218ENST00000486837 MS4A1P11836 297 aa10.39□□□□□ -0.75
LMBR1-218ENST00000486837 POTEBQ6S5H4 581 aa10.39□□□□□ -0.75
LMBR1-218ENST00000486837 FAM217BQ9NTX9 383 aaPredicted RBP10.39□□□□□ -0.75
LMBR1-218ENST00000486837 TK2O00142 265 aa10.37□□□□□ -0.75
LMBR1-218ENST00000486837 SSTR3P32745 418 aaPredicted RBP10.37□□□□□ -0.75
LMBR1-218ENST00000486837 NLRP7Q8WX94 980 aa10.37□□□□□ -0.75
LMBR1-218ENST00000486837 VPS9D1Q9Y2B5 631 aa10.37□□□□□ -0.75
LMBR1-218ENST00000486837 TMEM134Q9H6X4 195 aa10.36□□□□□ -0.75
LMBR1-218ENST00000486837 PLEKHG3A1L390 1219 aa10.35□□□□□ -0.75
LMBR1-218ENST00000486837 SMAPO00193 183 aa10.35□□□□□ -0.75
LMBR1-218ENST00000486837 SULF1Q8IWU6 871 aa10.33□□□□□ -0.76
LMBR1-218ENST00000486837 NBPF3Q9H094 633 aa10.33□□□□□ -0.76
LMBR1-218ENST00000486837 GTF3C3Q9Y5Q9 886 aa10.33□□□□□ -0.76
LMBR1-218ENST00000486837 BHMG1C9JSJ3 638 aaPredicted RBP10.32□□□□□ -0.76
LMBR1-218ENST00000486837 LSM11P83369 360 aaKnown RBP eCLIP10.32□□□□□ -0.76
LMBR1-218ENST00000486837 FAM98CQ17RN3 349 aaKnown RBP10.32□□□□□ -0.76
LMBR1-218ENST00000486837 LAPTM4BQ86VI4 370 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms