RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NPHP1O15259 732 aa14.16□□□□□ -0.14
HDAC6-228ENST00000486227 IPO9Q96P70 1041 aaKnown RBP14.16□□□□□ -0.14
HDAC6-228ENST00000486227 TERF2IPQ9NYB0 399 aa14.16□□□□□ -0.14
HDAC6-228ENST00000486227 HFM1A2PYH4 1435 aa14.16□□□□□ -0.14
HDAC6-228ENST00000486227 CDK13Q14004 1512 aaKnown RBP14.15□□□□□ -0.14
HDAC6-228ENST00000486227 ARHGAP5Q13017 1502 aa14.15□□□□□ -0.14
HDAC6-228ENST00000486227 AEBP2Q6ZN18 517 aaPredicted RBP14.15□□□□□ -0.15
HDAC6-228ENST00000486227 EPRSP07814 1512 aaKnown RBP14.14□□□□□ -0.15
HDAC6-228ENST00000486227 CCDC7Q96M83 1385 aa14.14□□□□□ -0.15
HDAC6-228ENST00000486227 MS4A1P11836 297 aa14.14□□□□□ -0.15
HDAC6-228ENST00000486227 NUTM2FA1L443 756 aa14.13□□□□□ -0.15
HDAC6-228ENST00000486227 WASHC2AQ641Q2 1341 aa14.13□□□□□ -0.15
HDAC6-228ENST00000486227 BIVM-ERCC5R4GMW8 1640 aa14.12□□□□□ -0.15
HDAC6-228ENST00000486227 PCF11O94913 1555 aaKnown RBP14.12□□□□□ -0.15
HDAC6-228ENST00000486227 HECW1Q76N89 1606 aa14.12□□□□□ -0.15
HDAC6-228ENST00000486227 CSB-PGBD3P0DP91 1061 aa14.12□□□□□ -0.15
HDAC6-228ENST00000486227 GOLGA2Q08379 1002 aa14.12□□□□□ -0.15
HDAC6-228ENST00000486227 IQGAP2Q13576 1575 aa14.11□□□□□ -0.15
HDAC6-228ENST00000486227 C9orf84Q5VXU9 1444 aa14.11□□□□□ -0.15
HDAC6-228ENST00000486227 NBPF8Q3BBV2 869 aa14.11□□□□□ -0.15
HDAC6-228ENST00000486227 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.1□□□□□ -0.15
HDAC6-228ENST00000486227 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.1□□□□□ -0.15
HDAC6-228ENST00000486227 NGDNQ8NEJ9 315 aaKnown RBP14.1□□□□□ -0.15
HDAC6-228ENST00000486227 ZNF608Q9ULD9 1512 aaPredicted RBP14.1□□□□□ -0.15
HDAC6-228ENST00000486227 NAIPQ13075 1403 aa14.09□□□□□ -0.15
HDAC6-228ENST00000486227 CUL7Q14999 1698 aa14.09□□□□□ -0.15
HDAC6-228ENST00000486227 TCERG1O14776 1098 aaKnown RBP14.09□□□□□ -0.15
HDAC6-228ENST00000486227 PDE3BQ13370 1112 aa14.09□□□□□ -0.15
HDAC6-228ENST00000486227 DAPK1P53355 1430 aa14.09□□□□□ -0.15
HDAC6-228ENST00000486227 MINK1Q8N4C8 1332 aaPredicted RBP14.08□□□□□ -0.16
HDAC6-228ENST00000486227 PLB1Q6P1J6 1458 aa14.07□□□□□ -0.16
HDAC6-228ENST00000486227 CHMP4BQ9H444 224 aaKnown RBP14.07□□□□□ -0.16
HDAC6-228ENST00000486227 CCDC9Q9Y3X0 531 aaKnown RBP14.06□□□□□ -0.16
HDAC6-228ENST00000486227 EVC2Q86UK5 1308 aa14.06□□□□□ -0.16
HDAC6-228ENST00000486227 NBPF1Q3BBV0 1214 aa14.06□□□□□ -0.16
HDAC6-228ENST00000486227 RTF1Q92541 710 aaKnown RBP14.06□□□□□ -0.16
HDAC6-228ENST00000486227 RRP7AQ9Y3A4 280 aaKnown RBP14.06□□□□□ -0.16
HDAC6-228ENST00000486227 GRIN2AQ12879 1464 aa14.06□□□□□ -0.16
HDAC6-228ENST00000486227 SUPT6HQ7KZ85 1726 aaKnown RBP14.06□□□□□ -0.16
HDAC6-228ENST00000486227 USP35Q9P2H5 1018 aa14.06□□□□□ -0.16
HDAC6-228ENST00000486227 KIAA1107Q9UPP5 1409 aa14.06□□□□□ -0.16
HDAC6-228ENST00000486227 ZBED9Q6R2W3 1325 aa14.05□□□□□ -0.16
HDAC6-228ENST00000486227 TRIM44Q96DX7 344 aaPredicted RBP14.05□□□□□ -0.16
HDAC6-228ENST00000486227 STAC3Q96MF2 364 aa14.05□□□□□ -0.16
HDAC6-228ENST00000486227 CFAP70Q5T0N1 1121 aa14.04□□□□□ -0.16
HDAC6-228ENST00000486227 TMEM132EQ6IEE7 984 aa14.04□□□□□ -0.16
HDAC6-228ENST00000486227 CNTLNQ9NXG0 1405 aa14.04□□□□□ -0.16
HDAC6-228ENST00000486227 SCAPERQ9BY12 1400 aa14.03□□□□□ -0.16
HDAC6-228ENST00000486227 CENPJQ9HC77 1338 aaPredicted RBP14.03□□□□□ -0.16
HDAC6-228ENST00000486227 MAP3K1Q13233 1512 aa14.03□□□□□ -0.16
HDAC6-228ENST00000486227 CGNL1Q0VF96 1302 aa14.03□□□□□ -0.16
HDAC6-228ENST00000486227 IPO8O15397 1037 aaKnown RBP14.02□□□□□ -0.16
HDAC6-228ENST00000486227 CLUAP1Q96AJ1 413 aa14.02□□□□□ -0.16
HDAC6-228ENST00000486227 NAP1L5Q96NT1 182 aaPredicted RBP14.02□□□□□ -0.16
HDAC6-228ENST00000486227 CALD1Q05682 793 aaKnown RBP14.01□□□□□ -0.17
HDAC6-228ENST00000486227 ARHGEF11O15085 1522 aa14.01□□□□□ -0.17
HDAC6-228ENST00000486227 MAGI1Q96QZ7 1491 aaPredicted RBP14.01□□□□□ -0.17
HDAC6-228ENST00000486227 APAF1O14727 1248 aa14.01□□□□□ -0.17
HDAC6-228ENST00000486227 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.01□□□□□ -0.17
HDAC6-228ENST00000486227 SMC4Q9NTJ3 1288 aa14□□□□□ -0.17
HDAC6-228ENST00000486227 L1TD1Q5T7N2 865 aaKnown RBP13.99□□□□□ -0.17
HDAC6-228ENST00000486227 ITPRIPQ8IWB1 547 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 PLIN1O60240 522 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 CASC1Q6TDU7 716 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 PLEKHH2Q8IVE3 1493 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 ROCK1Q13464 1354 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 WDR97A6NE52 1622 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 RAPGEF3O95398 923 aa13.99□□□□□ -0.17
HDAC6-228ENST00000486227 ABCC5O15440 1437 aa13.98□□□□□ -0.17
HDAC6-228ENST00000486227 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.97□□□□□ -0.17
HDAC6-228ENST00000486227 OS9Q13438 667 aaPredicted RBP13.97□□□□□ -0.17
HDAC6-228ENST00000486227 AMPHP49418 695 aa13.97□□□□□ -0.17
HDAC6-228ENST00000486227 LTV1Q96GA3 475 aaPredicted RBP13.96□□□□□ -0.17
HDAC6-228ENST00000486227 APBB1O00213 710 aa13.96□□□□□ -0.18
HDAC6-228ENST00000486227 BCL2L13Q9BXK5 485 aa13.95□□□□□ -0.18
HDAC6-228ENST00000486227 RWDD1Q9H446 243 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-228ENST00000486227 COG3Q96JB2 828 aa13.95□□□□□ -0.18
HDAC6-228ENST00000486227 PTPN23Q9H3S7 1636 aa13.94□□□□□ -0.18
HDAC6-228ENST00000486227 EXOC6Q8TAG9 804 aa13.94□□□□□ -0.18
HDAC6-228ENST00000486227 CABP2Q9NPB3 220 aa13.94□□□□□ -0.18
HDAC6-228ENST00000486227 CAMSAP2Q08AD1 1489 aa13.94□□□□□ -0.18
HDAC6-228ENST00000486227 RRP1P56182 461 aaKnown RBP13.93□□□□□ -0.18
HDAC6-228ENST00000486227 CHMP4AQ9BY43 222 aa13.93□□□□□ -0.18
HDAC6-228ENST00000486227 ANKRD30BQ9BXX2 1392 aa13.92□□□□□ -0.18
HDAC6-228ENST00000486227 E9PSI1 815 aa13.92□□□□□ -0.18
HDAC6-228ENST00000486227 GOLGA6L22H0YM25 854 aa13.92□□□□□ -0.18
HDAC6-228ENST00000486227 ELL2O00472 640 aaPredicted RBP13.92□□□□□ -0.18
HDAC6-228ENST00000486227 GGNBP2Q9H3C7 697 aa13.91□□□□□ -0.18
HDAC6-228ENST00000486227 ZNF330Q9Y3S2 320 aaPredicted RBP13.91□□□□□ -0.18
HDAC6-228ENST00000486227 CCDC141Q6ZP82 1450 aa13.91□□□□□ -0.18
HDAC6-228ENST00000486227 LMOD3Q0VAK6 560 aa13.9□□□□□ -0.18
HDAC6-228ENST00000486227 NCOA1Q15788 1441 aa13.9□□□□□ -0.18
HDAC6-228ENST00000486227 ADAMTS8Q9UP79 889 aa13.9□□□□□ -0.18
HDAC6-228ENST00000486227 AKNAQ7Z591 1439 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 PMFBP1Q8TBY8 1022 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 DIAPH1O60610 1272 aaKnown RBP13.89□□□□□ -0.19
HDAC6-228ENST00000486227 CCDC184Q52MB2 194 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 CRBNQ96SW2 442 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 STK31Q9BXU1 1019 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 BRD4O60885 1362 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms