RNA–Protein interactions for RNA: ENST00000486085.5

RTN4-214, Transcript of reticulon 4, humanhuman

TSL 3

Gene RTN4, Length 955 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-214ENST00000486085 NPDC1Q9NQX5 325 aaPredicted RBP13.13□□□□□ -0.31
RTN4-214ENST00000486085 PPP4R3BQ5MIZ7 849 aa13.12□□□□□ -0.31
RTN4-214ENST00000486085 C6orf132Q5T0Z8 1188 aa13.12□□□□□ -0.31
RTN4-214ENST00000486085 PSDA5PKW4 1024 aaPredicted RBP13.1□□□□□ -0.31
RTN4-214ENST00000486085 MINK1Q8N4C8 1332 aaPredicted RBP13.1□□□□□ -0.31
RTN4-214ENST00000486085 MAP2K5Q13163 448 aa13.09□□□□□ -0.31
RTN4-214ENST00000486085 IRF6O14896 467 aa13.07□□□□□ -0.32
RTN4-214ENST00000486085 ST18O60284 1047 aa13.06□□□□□ -0.32
RTN4-214ENST00000486085 BRPF1P55201 1214 aaPredicted RBP13.06□□□□□ -0.32
RTN4-214ENST00000486085 NEUROD2Q15784 382 aa13.05□□□□□ -0.32
RTN4-214ENST00000486085 CCDC102AQ96A19 550 aa13.05□□□□□ -0.32
RTN4-214ENST00000486085 TRIM66O15016 1216 aa13.04□□□□□ -0.32
RTN4-214ENST00000486085 CERKQ8TCT0 537 aa13.03□□□□□ -0.32
RTN4-214ENST00000486085 FAM163AQ96GL9 167 aaPredicted RBP13.03□□□□□ -0.32
RTN4-214ENST00000486085 BCL2L12Q9HB09 334 aa13.03□□□□□ -0.32
RTN4-214ENST00000486085 ERBB3P21860 1342 aa13.02□□□□□ -0.33
RTN4-214ENST00000486085 COL9A1P20849 921 aa13□□□□□ -0.33
RTN4-214ENST00000486085 PTPREP23469 700 aa13□□□□□ -0.33
RTN4-214ENST00000486085 MARVELD3Q96A59 401 aa13□□□□□ -0.33
RTN4-214ENST00000486085 EMP3P54852 163 aa12.99□□□□□ -0.33
RTN4-214ENST00000486085 PDE4DQ08499 809 aa12.99□□□□□ -0.33
RTN4-214ENST00000486085 PADI6Q6TGC4 694 aa12.99□□□□□ -0.33
RTN4-214ENST00000486085 VARS2Q5ST30 1063 aaKnown RBP12.98□□□□□ -0.33
RTN4-214ENST00000486085 PRSS12P56730 875 aa12.96□□□□□ -0.33
RTN4-214ENST00000486085 FAM161AQ3B820 660 aa12.96□□□□□ -0.33
RTN4-214ENST00000486085 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.33
RTN4-214ENST00000486085 KCNK17Q96T54 332 aa12.96□□□□□ -0.33
RTN4-214ENST00000486085 GPBP1L1Q9HC44 474 aaPredicted RBP12.96□□□□□ -0.33
RTN4-214ENST00000486085 PPP1R3GB7ZBB8 358 aa12.94□□□□□ -0.34
RTN4-214ENST00000486085 FAM205CA6NFA0 338 aa12.93□□□□□ -0.34
RTN4-214ENST00000486085 TTC13Q8NBP0 860 aa12.92□□□□□ -0.34
RTN4-214ENST00000486085 KCNH8Q96L42 1107 aa12.92□□□□□ -0.34
RTN4-214ENST00000486085 RBM27Q9P2N5 1060 aaKnown RBP12.92□□□□□ -0.34
RTN4-214ENST00000486085 PSEN2P49810 448 aa12.9□□□□□ -0.34
RTN4-214ENST00000486085 AMHR2Q16671 573 aa12.9□□□□□ -0.34
RTN4-214ENST00000486085 FAM198AQ9UFP1 575 aa12.9□□□□□ -0.34
RTN4-214ENST00000486085 ADGRG1Q9Y653 693 aa12.9□□□□□ -0.34
RTN4-214ENST00000486085 KDM4CQ9H3R0 1056 aa12.89□□□□□ -0.35
RTN4-214ENST00000486085 OATP04181 439 aa12.88□□□□□ -0.35
RTN4-214ENST00000486085 TSKSQ9UJT2 592 aa12.88□□□□□ -0.35
RTN4-214ENST00000486085 AXIN2Q9Y2T1 843 aa12.88□□□□□ -0.35
RTN4-214ENST00000486085 ARHGAP33O14559 1287 aa12.87□□□□□ -0.35
RTN4-214ENST00000486085 TTLL12Q14166 644 aaPredicted RBP12.87□□□□□ -0.35
RTN4-214ENST00000486085 PROX2Q3B8N5 592 aa12.87□□□□□ -0.35
RTN4-214ENST00000486085 PHOX2BQ99453 314 aa12.87□□□□□ -0.35
RTN4-214ENST00000486085 TMEM132AQ24JP5 1023 aa12.86□□□□□ -0.35
RTN4-214ENST00000486085 POTEEQ6S8J3 1075 aa12.86□□□□□ -0.35
RTN4-214ENST00000486085 METTL3Q86U44 580 aaKnown RBP12.86□□□□□ -0.35
RTN4-214ENST00000486085 PARP9Q8IXQ6 854 aa12.86□□□□□ -0.35
RTN4-214ENST00000486085 TRIM6-TRIM34B2RNG4 842 aa12.85□□□□□ -0.35
RTN4-214ENST00000486085 LCE2DQ5TA82 110 aaPredicted RBP12.85□□□□□ -0.35
RTN4-214ENST00000486085 PXYLP1Q8TE99 480 aa12.85□□□□□ -0.35
RTN4-214ENST00000486085 HS3ST6Q96QI5 342 aa12.85□□□□□ -0.35
RTN4-214ENST00000486085 ZNF687Q8N1G0 1237 aa12.84□□□□□ -0.35
RTN4-214ENST00000486085 RBM46Q8TBY0 533 aaKnown RBP12.84□□□□□ -0.35
RTN4-214ENST00000486085 NLRP7Q8WX94 980 aa12.84□□□□□ -0.35
RTN4-214ENST00000486085 POTEB3A0JP26 581 aa12.83□□□□□ -0.36
RTN4-214ENST00000486085 MDM2Q00987 491 aaPredicted RBP12.83□□□□□ -0.36
RTN4-214ENST00000486085 POTEBQ6S5H4 581 aa12.83□□□□□ -0.36
RTN4-214ENST00000486085 PACS2Q86VP3 889 aa12.83□□□□□ -0.36
RTN4-214ENST00000486085 ZBED2Q9BTP6 218 aa12.83□□□□□ -0.36
RTN4-214ENST00000486085 C3orf80F5H4A9 247 aa12.82□□□□□ -0.36
RTN4-214ENST00000486085 DMRTA1Q5VZB9 504 aa12.82□□□□□ -0.36
RTN4-214ENST00000486085 NUDT18Q6ZVK8 323 aa12.82□□□□□ -0.36
RTN4-214ENST00000486085 PBX2P40425 430 aa12.81□□□□□ -0.36
RTN4-214ENST00000486085 IL27Q8NEV9 243 aa12.81□□□□□ -0.36
RTN4-214ENST00000486085 REPIN1Q9BWE0 567 aaKnown RBP12.81□□□□□ -0.36
RTN4-214ENST00000486085 PNMA3Q9UL41 463 aa12.81□□□□□ -0.36
RTN4-214ENST00000486085 GIGYF2Q6Y7W6 1299 aaKnown RBP12.8□□□□□ -0.36
RTN4-214ENST00000486085 TATDN2Q93075 761 aa12.8□□□□□ -0.36
RTN4-214ENST00000486085 KIAA1468Q9P260 1216 aa12.8□□□□□ -0.36
RTN4-214ENST00000486085 NBPF26B4DH59 902 aa12.79□□□□□ -0.36
RTN4-214ENST00000486085 ONECUT3O60422 494 aaPredicted RBP12.79□□□□□ -0.36
RTN4-214ENST00000486085 CLCN1P35523 988 aa12.79□□□□□ -0.36
RTN4-214ENST00000486085 EYA1Q99502 592 aa12.79□□□□□ -0.36
RTN4-214ENST00000486085 SMAPO00193 183 aa12.78□□□□□ -0.36
RTN4-214ENST00000486085 TMUB1Q9BVT8 246 aa12.77□□□□□ -0.37
RTN4-214ENST00000486085 FAM117AQ9C073 453 aa12.77□□□□□ -0.37
RTN4-214ENST00000486085 GPCPD1Q9NPB8 672 aa12.77□□□□□ -0.37
RTN4-214ENST00000486085 RCCD1A6NED2 376 aa12.76□□□□□ -0.37
RTN4-214ENST00000486085 SLC4A5Q9BY07 1137 aa12.75□□□□□ -0.37
RTN4-214ENST00000486085 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.74□□□□□ -0.37
RTN4-214ENST00000486085 MS4A1P11836 297 aa12.74□□□□□ -0.37
RTN4-214ENST00000486085 SSTR3P32745 418 aaPredicted RBP12.73□□□□□ -0.37
RTN4-214ENST00000486085 VPS9D1Q9Y2B5 631 aa12.73□□□□□ -0.37
RTN4-214ENST00000486085 RABGEF1Q9UJ41 708 aa12.72□□□□□ -0.37
RTN4-214ENST00000486085 DNAJB2P25686 324 aa12.71□□□□□ -0.37
RTN4-214ENST00000486085 DDRGK1Q96HY6 314 aa12.71□□□□□ -0.37
RTN4-214ENST00000486085 DAXXQ9UER7 740 aaPredicted RBP12.71□□□□□ -0.37
RTN4-214ENST00000486085 FAM217BQ9NTX9 383 aaPredicted RBP12.7□□□□□ -0.38
RTN4-214ENST00000486085 SEPT9Q9UHD8 586 aaPredicted RBP12.7□□□□□ -0.38
RTN4-214ENST00000486085 PLEKHG3A1L390 1219 aa12.68□□□□□ -0.38
RTN4-214ENST00000486085 LSM11P83369 360 aaKnown RBP eCLIP12.67□□□□□ -0.38
RTN4-214ENST00000486085 TMEM134Q9H6X4 195 aa12.66□□□□□ -0.38
RTN4-214ENST00000486085 TK2O00142 265 aa12.65□□□□□ -0.38
RTN4-214ENST00000486085 BEGAINQ9BUH8 593 aa12.64□□□□□ -0.39
RTN4-214ENST00000486085 GTF3C3Q9Y5Q9 886 aa12.64□□□□□ -0.39
RTN4-214ENST00000486085 ANKRD13DQ6ZTN6 518 aa12.63□□□□□ -0.39
RTN4-214ENST00000486085 NBPF3Q9H094 633 aa12.63□□□□□ -0.39
RTN4-214ENST00000486085 DDX11L8A8MPP1 907 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms