RNA–Protein interactions for RNA: ENST00000478420.1

SMARCA1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 3

Gene SMARCA1, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-204ENST00000478420 ADAM33Q9BZ11 813 aa8.99□□□□□ -0.97
SMARCA1-204ENST00000478420 FCHSD2O94868 740 aa8.98□□□□□ -0.97
SMARCA1-204ENST00000478420 TSR1Q2NL82 804 aaKnown RBP8.98□□□□□ -0.97
SMARCA1-204ENST00000478420 C6orf132Q5T0Z8 1188 aa8.98□□□□□ -0.97
SMARCA1-204ENST00000478420 VARS2Q5ST30 1063 aaKnown RBP8.97□□□□□ -0.97
SMARCA1-204ENST00000478420 BCL2L12Q9HB09 334 aa8.97□□□□□ -0.97
SMARCA1-204ENST00000478420 FAM205CA6NFA0 338 aa8.96□□□□□ -0.98
SMARCA1-204ENST00000478420 ZMYND10O75800 440 aa8.96□□□□□ -0.98
SMARCA1-204ENST00000478420 PTGDRQ13258 359 aa8.96□□□□□ -0.98
SMARCA1-204ENST00000478420 CDHR5Q9HBB8 845 aa8.96□□□□□ -0.98
SMARCA1-204ENST00000478420 GPR37O15354 613 aa8.95□□□□□ -0.98
SMARCA1-204ENST00000478420 PTPREP23469 700 aa8.95□□□□□ -0.98
SMARCA1-204ENST00000478420 HIC1Q14526 733 aa8.95□□□□□ -0.98
SMARCA1-204ENST00000478420 SPNS2Q8IVW8 549 aa8.95□□□□□ -0.98
SMARCA1-204ENST00000478420 CERKQ8TCT0 537 aa8.95□□□□□ -0.98
SMARCA1-204ENST00000478420 GNPATO15228 680 aa8.94□□□□□ -0.98
SMARCA1-204ENST00000478420 BARGINQ6ZT62 677 aa8.94□□□□□ -0.98
SMARCA1-204ENST00000478420 KCNH8Q96L42 1107 aa8.94□□□□□ -0.98
SMARCA1-204ENST00000478420 KRI1Q8N9T8 703 aaKnown RBP8.92□□□□□ -0.98
SMARCA1-204ENST00000478420 NPDC1Q9NQX5 325 aaPredicted RBP8.92□□□□□ -0.98
SMARCA1-204ENST00000478420 HS3ST6Q96QI5 342 aa8.91□□□□□ -0.98
SMARCA1-204ENST00000478420 PPP1R3GB7ZBB8 358 aa8.9□□□□□ -0.98
SMARCA1-204ENST00000478420 ZNF687Q8N1G0 1237 aa8.9□□□□□ -0.98
SMARCA1-204ENST00000478420 KCNK17Q96T54 332 aa8.9□□□□□ -0.98
SMARCA1-204ENST00000478420 SLC24A3Q9HC58 644 aa8.89□□□□□ -0.99
SMARCA1-204ENST00000478420 ARHGAP33O14559 1287 aa8.88□□□□□ -0.99
SMARCA1-204ENST00000478420 COL9A1P20849 921 aa8.88□□□□□ -0.99
SMARCA1-204ENST00000478420 PBX2P40425 430 aa8.88□□□□□ -0.99
SMARCA1-204ENST00000478420 MAP2K5Q13163 448 aa8.88□□□□□ -0.99
SMARCA1-204ENST00000478420 MINK1Q8N4C8 1332 aaPredicted RBP8.87□□□□□ -0.99
SMARCA1-204ENST00000478420 FECHP22830 423 aa8.87□□□□□ -0.99
SMARCA1-204ENST00000478420 PRSS12P56730 875 aa8.87□□□□□ -0.99
SMARCA1-204ENST00000478420 RBM27Q9P2N5 1060 aaKnown RBP8.87□□□□□ -0.99
SMARCA1-204ENST00000478420 POTEB3A0JP26 581 aa8.86□□□□□ -0.99
SMARCA1-204ENST00000478420 PSEN2P49810 448 aa8.86□□□□□ -0.99
SMARCA1-204ENST00000478420 POTEBQ6S5H4 581 aa8.86□□□□□ -0.99
SMARCA1-204ENST00000478420 CDCA7LQ96GN5 454 aa8.86□□□□□ -0.99
SMARCA1-204ENST00000478420 IRF6O14896 467 aa8.85□□□□□ -0.99
SMARCA1-204ENST00000478420 PADI6Q6TGC4 694 aa8.85□□□□□ -0.99
SMARCA1-204ENST00000478420 AK7Q96M32 723 aa8.85□□□□□ -0.99
SMARCA1-204ENST00000478420 AXIN2Q9Y2T1 843 aa8.85□□□□□ -0.99
SMARCA1-204ENST00000478420 POTEEQ6S8J3 1075 aa8.84□□□□□ -0.99
SMARCA1-204ENST00000478420 CCDC102AQ96A19 550 aa8.83□□□□□ -1
SMARCA1-204ENST00000478420 TTC13Q8NBP0 860 aa8.82□□□□□ -1
SMARCA1-204ENST00000478420 ZBED2Q9BTP6 218 aa8.82□□□□□ -1
SMARCA1-204ENST00000478420 TRIM6-TRIM34B2RNG4 842 aa8.81□□□□□ -1
SMARCA1-204ENST00000478420 PROX2Q3B8N5 592 aa8.81□□□□□ -1
SMARCA1-204ENST00000478420 DMRTA1Q5VZB9 504 aa8.81□□□□□ -1
SMARCA1-204ENST00000478420 PACS2Q86VP3 889 aa8.81□□□□□ -1
SMARCA1-204ENST00000478420 ONECUT3O60422 494 aaPredicted RBP8.8□□□□□ -1
SMARCA1-204ENST00000478420 OATP04181 439 aa8.8□□□□□ -1
SMARCA1-204ENST00000478420 SLC4A5Q9BY07 1137 aa8.8□□□□□ -1
SMARCA1-204ENST00000478420 TSKSQ9UJT2 592 aa8.8□□□□□ -1
SMARCA1-204ENST00000478420 FAM198AQ9UFP1 575 aa8.79□□□□□ -1
SMARCA1-204ENST00000478420 ADGRG1Q9Y653 693 aa8.79□□□□□ -1
SMARCA1-204ENST00000478420 NBPF26B4DH59 902 aa8.78□□□□□ -1
SMARCA1-204ENST00000478420 TRIM66O15016 1216 aa8.78□□□□□ -1
SMARCA1-204ENST00000478420 RBM46Q8TBY0 533 aaKnown RBP8.78□□□□□ -1
SMARCA1-204ENST00000478420 LSM11P83369 360 aaKnown RBP eCLIP8.77□□□□□ -1.01
SMARCA1-204ENST00000478420 FAM161AQ3B820 660 aa8.77□□□□□ -1.01
SMARCA1-204ENST00000478420 KIAA1468Q9P260 1216 aa8.77□□□□□ -1.01
SMARCA1-204ENST00000478420 TK2O00142 265 aa8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 METTL3Q86U44 580 aaKnown RBP8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 TATDN2Q93075 761 aa8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 RABGEF1Q9UJ41 708 aa8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 PNMA3Q9UL41 463 aa8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 VPS9D1Q9Y2B5 631 aa8.76□□□□□ -1.01
SMARCA1-204ENST00000478420 NUDT18Q6ZVK8 323 aa8.75□□□□□ -1.01
SMARCA1-204ENST00000478420 PXYLP1Q8TE99 480 aa8.75□□□□□ -1.01
SMARCA1-204ENST00000478420 PDE4DQ08499 809 aa8.74□□□□□ -1.01
SMARCA1-204ENST00000478420 AMHR2Q16671 573 aa8.74□□□□□ -1.01
SMARCA1-204ENST00000478420 NEUROD2Q15784 382 aa8.73□□□□□ -1.01
SMARCA1-204ENST00000478420 ADGRD1Q6QNK2 874 aa8.73□□□□□ -1.01
SMARCA1-204ENST00000478420 ANKRD13DQ6ZTN6 518 aa8.73□□□□□ -1.01
SMARCA1-204ENST00000478420 NBPF3Q9H094 633 aa8.73□□□□□ -1.01
SMARCA1-204ENST00000478420 SMAPO00193 183 aa8.72□□□□□ -1.01
SMARCA1-204ENST00000478420 EYA1Q99502 592 aa8.72□□□□□ -1.01
SMARCA1-204ENST00000478420 KRTAP3-3Q9BYR6 98 aa8.72□□□□□ -1.01
SMARCA1-204ENST00000478420 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
SMARCA1-204ENST00000478420 C3orf80F5H4A9 247 aa8.71□□□□□ -1.02
SMARCA1-204ENST00000478420 BRPF1P55201 1214 aaPredicted RBP8.71□□□□□ -1.02
SMARCA1-204ENST00000478420 TTLL12Q14166 644 aaPredicted RBP8.71□□□□□ -1.02
SMARCA1-204ENST00000478420 PHOX2BQ99453 314 aa8.71□□□□□ -1.02
SMARCA1-204ENST00000478420 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.7□□□□□ -1.02
SMARCA1-204ENST00000478420 RCCD1A6NED2 376 aa8.7□□□□□ -1.02
SMARCA1-204ENST00000478420 SEPT9Q9UHD8 586 aaPredicted RBP8.7□□□□□ -1.02
SMARCA1-204ENST00000478420 BHMG1C9JSJ3 638 aaPredicted RBP8.69□□□□□ -1.02
SMARCA1-204ENST00000478420 DNAJB2P25686 324 aa8.69□□□□□ -1.02
SMARCA1-204ENST00000478420 CLCN1P35523 988 aa8.69□□□□□ -1.02
SMARCA1-204ENST00000478420 MDM2Q00987 491 aaPredicted RBP8.69□□□□□ -1.02
SMARCA1-204ENST00000478420 STAC3Q96MF2 364 aa8.69□□□□□ -1.02
SMARCA1-204ENST00000478420 FAM98CQ17RN3 349 aaKnown RBP8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 LAPTM4BQ86VI4 370 aa8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 PARP9Q8IXQ6 854 aa8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 MRPL50Q8N5N7 158 aaKnown RBP8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 NLRP7Q8WX94 980 aa8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 GPCPD1Q9NPB8 672 aa8.68□□□□□ -1.02
SMARCA1-204ENST00000478420 HRO43593 1189 aa8.67□□□□□ -1.02
SMARCA1-204ENST00000478420 GPBP1L1Q9HC44 474 aaPredicted RBP8.67□□□□□ -1.02
SMARCA1-204ENST00000478420 HDGFP51858 240 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms